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if [[ $# -gt 0 && "$1" == "--help" || "$1" == "-h" ]]; then
/compi run -p /pipeline*.xml "$@"
echo -e "\nAdditional CGA commands:"
echo -e "\t- init_working_dir.sh /working_dir: initializes the working directory with a base parameters file."
echo -e "\t- process_logs.sh /working_dir /working_dir/logs/<timestamp>/tasks: processes the Compi logs directory to create a report of tasks with errors or warnings."
else
if [ $# -gt 0 ] && [ "$1" == "resume" ]; then
/compi resume -p /pipeline*.xml "${@:2}"
else
if [ $# -gt 0 ] && [ "$1" == "init_working_dir.sh" ]; then
init_working_dir.sh "${@:2}"
else
if [ $# -gt 0 ] && [ "$1" == "process_logs.sh" ]; then