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environment.yml
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name: ospa_ist
channels:
- r
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- bcftools=1.18=h8b25389_0
- blast=2.15.0=pl5321h6f7f691_1
- bwa=0.7.17=he4a0461_11
- bzip2=1.0.8=hd590300_5
- c-ares=1.22.1=hd590300_0
- ca-certificates=2023.11.17=hbcca054_0
- curl=8.4.0=hca28451_0
- entrez-direct=16.2=he881be0_1
- gettext=0.21.1=h27087fc_0
- gsl=2.7=he838d99_0
- htslib=1.18=h81da01d_0
- icu=70.1=h27087fc_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=20_linux64_openblas
- libcblas=3.9.0=20_linux64_openblas
- libcurl=8.4.0=hca28451_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h807b86a_3
- libgfortran-ng=13.2.0=h69a702a_3
- libgfortran5=13.2.0=ha4646dd_3
- libgomp=13.2.0=h807b86a_3
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=20_linux64_openblas
- libnghttp2=1.58.0=h47da74e_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.25=pthreads_h413a1c8_0
- libsqlite=3.44.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=13.2.0=h7e041cc_3
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libxml2=2.9.14=h22db469_4
- libzlib=1.2.13=hd590300_5
- mafft=7.520=h031d066_2
- ncbi-vdb=3.0.8=hdbdd923_0
- ncurses=6.4=h59595ed_2
- openssl=3.1.4=hd590300_0
- ossuuid=1.6.2=hf484d3e_1000
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=4_hd590300_perl5
- perl-alien-build=2.48=pl5321hec16e2b_0
- perl-alien-libxml2=0.17=pl5321hec16e2b_0
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-business-isbn=3.007=pl5321hdfd78af_0
- perl-business-isbn-data=20210112.006=pl5321hdfd78af_0
- perl-capture-tiny=0.48=pl5321hdfd78af_2
- perl-carp=1.38=pl5321hdfd78af_4
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
- perl-compress-raw-zlib=2.105=pl5321h87f3376_0
- perl-constant=1.33=pl5321hdfd78af_2
- perl-data-dumper=2.183=pl5321hec16e2b_1
- perl-encode=3.19=pl5321hec16e2b_1
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
- perl-ffi-checklib=0.28=pl5321hdfd78af_0
- perl-file-chdir=0.1010=pl5321hdfd78af_3
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- perl-file-which=1.24=pl5321hd8ed1ab_0
- perl-importer=0.026=pl5321hdfd78af_0
- perl-io-compress=2.201=pl5321hdbdd923_2
- perl-io-zlib=1.14=pl5321hdfd78af_0
- perl-json=4.10=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h4ac6f70_6
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321h031d066_2
- perl-mime-base64=3.16=pl5321hec16e2b_2
- perl-parent=0.236=pl5321hdfd78af_2
- perl-path-tiny=0.122=pl5321hdfd78af_0
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-scalar-list-utils=1.62=pl5321hec16e2b_1
- perl-scope-guard=0.21=pl5321hdfd78af_3
- perl-sub-info=0.002=pl5321hdfd78af_1
- perl-term-table=0.016=pl5321hdfd78af_0
- perl-test2-suite=0.000145=pl5321hdfd78af_0
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- perl-uri=5.12=pl5321hdfd78af_0
- perl-xml-libxml=2.0207=pl5321h661654b_0
- perl-xml-namespacesupport=1.12=pl5321hdfd78af_1
- perl-xml-sax=1.02=pl5321hdfd78af_1
- perl-xml-sax-base=1.09=pl5321hdfd78af_1
- pip=23.3.1=pyhd8ed1ab_0
- python=3.11.6=hab00c5b_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.11=4_cp311
- pytz=2023.3.post1=pyhd8ed1ab_0
- readline=8.2=h8228510_1
- samtools=1.18=h50ea8bc_1
- screed=1.1.2=pyhd8ed1ab_0
- setuptools=68.2.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- tk=8.6.13=noxft_h4845f30_101
- tzdata=2023c=h71feb2d_0
- wget=1.20.3=ha35d2d1_1
- wheel=0.41.3=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- pip:
- biopython==1.81
- numpy==1.26.0
- pandas==2.1.3
- pyvcf==0.6.8
prefix: /root/anaconda3/envs/ospa_ist