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Trying to add a new revision of ICD-10 in English is throwing an error on Debian 10 #329

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josharmenta opened this issue Oct 19, 2024 · 0 comments

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@josharmenta
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josharmenta commented Oct 19, 2024

Trying to add a new revision of ICD-10 in English is throwing an error. Not sure if this is related to the file but wanted to make sure it was known.

Source is the US CDC: https://www.cdc.gov/nchs/icd/icd-10-cm/files.html

sudo -u ctsms /ctsms/dbtool.sh -iis /ctsms/master_data/icd-10-cm-tabular-2025.xml -sl en
2024-10-18 19:28:20: starting...
CTSMS_PROPERTIES: /ctsms/properties
CTSMS_JAVA: /ctsms/java
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.dom4j.io.SAXContentHandler (file:/var/lib/tomcat9/webapps/ROOT/WEB-INF/lib/dom4j-1.6.1.jar) to method com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser$LocatorProxy.getEncoding()
WARNING: Please consider reporting this to the maintainers of org.dom4j.io.SAXContentHandler
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release
Phoenix Clinical Trial Management System
version: 1.8.1 [3cb223cf]
instance: server-name/localhost
java.version: 11.0.24
java.home: /usr/lib/jvm/java-11-openjdk-amd64
task: import icd systematics
no icd systematics revision specified, using icd-10-cm-tabular-2025
reading from file /ctsms/master_data/icd-10-cm-tabular-2025.xml
2024-10-19 02:28:28: ERROR OCCURRED
java.lang.NullPointerException
	at org.phoenixctms.ctsms.executable.claml.ClamlImporter.parseClassKinds(ClamlImporter.java:163)
	at org.phoenixctms.ctsms.executable.claml.ClamlImporter.parse(ClamlImporter.java:112)
	at org.phoenixctms.ctsms.executable.claml.ClamlImporter.loadIcdSyst(ClamlImporter.java:84)
	at org.phoenixctms.ctsms.executable.DBTool.main(DBTool.java:764)
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