notebook/00_Multireference_Alignment.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "from isac import *\n",
    "from global_def import *\n",
    "data = EMData.read_images(\"rib70s.hdf\")\n",
    "refi = generate_random_averages(data, 50)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "for j in range(50):  refi[j].write_image(\"rib70s_ref50.hdf\", j)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "!sxheader.py rib70s.hdf --params=\"xform.align2d\" --zero"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "out_0329/logfile_2021_03_29_10_28_41\n",
      "out_0329/logfile_2021_03_29_10_28_41\n",
      "out_0329/logfile_2021_03_29_10_28_41\n",
      "out_0329/logfile_2021_03_29_10_28_41\n",
      "\n",
      "Warning: No GPU was specified. Using GPU [0] by default.\n",
      "           -> Program will crash if the selected GPU does not suffice.\n",
      "           -> Use \"$ nividia-smi\" in the terminal to see a list of available GPUs.'\n",
      "\n",
      "2021-03-29 10:28:47 :: main() :: Running memory check..\n",
      "                                 ..avl sys mem (RAM): 247726.09 MB / 241.92 GB\n",
      "                                 ..use sys mem (RAM): 185794.57 MB / 181.44 GB\n",
      "                                 ..est mem req (raw data, 5000 130x130 images): 322.34 MB / 0.31 GB\n",
      "                                 ..4 MPI procs set to read data in batches of (max) 719237 images each (batch mem: 46368.06 MB / 45.28 GB)\n",
      "                                 >>All good to go!\n",
      "2021-03-29 10:28:47 :: main() :: Reading data\n",
      "2021-03-29 10:28:48 :: main() :: Distributing workload to available GPUs\n",
      "2021-03-29 10:28:48 :: main() :: Executing pre-alignment\n",
      "2021-03-29 10:28:48 :: mref_ali2d_gpu() :: MPI proc[0] run pre-alignment CPU setup\n",
      "2021-03-29 10:28:49 :: mref_ali2d_gpu() :: MPI proc[0] run pre-alignment GPU setup\n",
      "2021-03-29 10:28:51 :: mref_ali2d_gpu() :: GPU[0] pre-alignment batch size: 2927/5000\n",
      "2021-03-29 10:28:52 :: mref_ali2d_gpu() :: GPU[0] batch count: 2\n",
      "2021-03-29 10:28:52 :: mref_ali2d_gpu() :: MPI proc[0] start alignment iterations\n",
      "[MREF-ALIGN][GPU0][==------------------------------------------------]~[1/20]~[5.00%]\n",
      "[MREF-ALIGN][GPU0][=====---------------------------------------------]~[2/20]~[10.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #     0\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.354        Center y       =     13.651\n",
      "ref_ali2d   #     1\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.192        Center y       =     -0.924\n",
      "ref_ali2d   #     2\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          11.300        Center y       =      3.254\n",
      "ref_ali2d   #     3\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -22.506        Center y       =    -20.162\n",
      "ref_ali2d   #     4\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.559        Center y       =     16.898\n",
      "ref_ali2d   #     5\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.547        Center y       =     19.677\n",
      "ref_ali2d   #     6\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          15.993        Center y       =     10.464\n",
      "ref_ali2d   #     7\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.950        Center y       =     -0.072\n",
      "ref_ali2d   #     8\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.833        Center y       =    -15.190\n",
      "ref_ali2d   #     9\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           5.852        Center y       =     12.184\n",
      "ref_ali2d   #    10\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.236        Center y       =      9.945\n",
      "ref_ali2d   #    11\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -9.613        Center y       =     -6.051\n",
      "ref_ali2d   #    12\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.092        Center y       =    -27.316\n",
      "ref_ali2d   #    13\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.650        Center y       =     -8.047\n",
      "ref_ali2d   #    14\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          11.291        Center y       =      2.337\n",
      "ref_ali2d   #    15\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -16.596        Center y       =    -12.441\n",
      "ref_ali2d   #    16\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.556        Center y       =     12.516\n",
      "ref_ali2d   #    17\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -18.476        Center y       =    -17.354\n",
      "ref_ali2d   #    18\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.684        Center y       =      1.005\n",
      "ref_ali2d   #    19\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.622        Center y       =      3.068\n",
      "ref_ali2d   #    20\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -22.153        Center y       =     -5.529\n",
      "ref_ali2d   #    21\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -31.175        Center y       =     -5.532\n",
      "ref_ali2d   #    22\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.307        Center y       =     -3.003\n",
      "ref_ali2d   #    23\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          12.657        Center y       =     15.826\n",
      "ref_ali2d   #    24\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.829        Center y       =      2.430\n",
      "ref_ali2d   #    25\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          17.457        Center y       =     15.796\n",
      "ref_ali2d   #    26\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.211        Center y       =      3.962\n",
      "ref_ali2d   #    27\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -21.166        Center y       =      3.955\n",
      "ref_ali2d   #    28\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -6.324        Center y       =    -13.534\n",
      "ref_ali2d   #    29\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.743        Center y       =     -4.850\n",
      "ref_ali2d   #    30\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          14.078        Center y       =     16.458\n",
      "ref_ali2d   #    31\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           5.652        Center y       =     21.350\n",
      "ref_ali2d   #    32\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           6.709        Center y       =     19.415\n",
      "ref_ali2d   #    33\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.766        Center y       =     -3.596\n",
      "ref_ali2d   #    34\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          26.313        Center y       =     -6.419\n",
      "ref_ali2d   #    35\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -8.347        Center y       =      0.818\n",
      "ref_ali2d   #    36\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -21.671        Center y       =     -4.644\n",
      "ref_ali2d   #    37\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -13.416        Center y       =      9.650\n",
      "ref_ali2d   #    38\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.030        Center y       =      5.058\n",
      "ref_ali2d   #    39\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.566        Center y       =      4.209\n",
      "ref_ali2d   #    40\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          28.431        Center y       =    -10.114\n",
      "ref_ali2d   #    41\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.962        Center y       =    -14.375\n",
      "ref_ali2d   #    42\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Center x =         -14.821        Center y       =     -2.645\n",
      "ref_ali2d   #    43\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.931        Center y       =     -6.380\n",
      "ref_ali2d   #    44\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.360        Center y       =      7.556\n",
      "ref_ali2d   #    45\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.529        Center y       =     -6.681\n",
      "ref_ali2d   #    46\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -6.309        Center y       =    -23.989\n",
      "ref_ali2d   #    47\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.793        Center y       =     14.997\n",
      "ref_ali2d   #    48\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.114        Center y       =      2.074\n",
      "ref_ali2d   #    49\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          16.280        Center y       =      6.024\n",
      "ITERATION #  1        1\n",
      "\n",
      "   group #  0   number of particles =       4\n",
      "   group #  1   number of particles =       7\n",
      "   group #  2   number of particles =      63\n",
      "   group #  3   number of particles =      12\n",
      "   group #  4   number of particles =       1\n",
      "   group #  5   number of particles =      16\n",
      "   group #  6   number of particles =      41\n",
      "   group #  7   number of particles =       1\n",
      "   group #  8   number of particles =       4\n",
      "   group #  9   number of particles =     507\n",
      "   group # 10   number of particles =      26\n",
      "   group # 11   number of particles =       4\n",
      "   group # 12   number of particles =      68\n",
      "   group # 13   number of particles =     896\n",
      "   group # 14   number of particles =     110\n",
      "   group # 15   number of particles =      70\n",
      "   group # 16   number of particles =    1137\n",
      "   group # 17   number of particles =     161\n",
      "   group # 18   number of particles =      37\n",
      "   group # 19   number of particles =       5\n",
      "   group # 20   number of particles =      12\n",
      "   group # 21   number of particles =       3\n",
      "   group # 22   number of particles =      48\n",
      "   group # 23   number of particles =       8\n",
      "   group # 24   number of particles =     380\n",
      "   group # 25   number of particles =      93\n",
      "   group # 26   number of particles =       4\n",
      "   group # 27   number of particles =       2\n",
      "   group # 28   number of particles =       1\n",
      "   group # 29   number of particles =       6\n",
      "   group # 30   number of particles =      50\n",
      "   group # 31   number of particles =      26\n",
      "   group # 32   number of particles =     107\n",
      "   group # 33   number of particles =      26\n",
      "   group # 34   number of particles =      56\n",
      "   group # 35   number of particles =     125\n",
      "   group # 36   number of particles =       6\n",
      "   group # 37   number of particles =      95\n",
      "   group # 38   number of particles =      54\n",
      "   group # 39   number of particles =      71\n",
      "   group # 40   number of particles =      27\n",
      "   group # 41   number of particles =      15\n",
      "   group # 42   number of particles =      24\n",
      "   group # 43   number of particles =      58\n",
      "   group # 44   number of particles =     112\n",
      "   group # 45   number of particles =     108\n",
      "   group # 46   number of particles =      18\n",
      "   group # 47   number of particles =      22\n",
      "   group # 48   number of particles =     272\n",
      "   group # 49   number of particles =       1\n",
      "[MREF-ALIGN][GPU0][=======-------------------------------------------]~[3/20]~[15.00%]\n",
      "[MREF-ALIGN][GPU0][==========----------------------------------------]~[4/20]~[20.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #    50\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          31.607        Center y       =     -1.962\n",
      "ref_ali2d   #    51\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -12.461        Center y       =     -1.634\n",
      "ref_ali2d   #    52\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.799        Center y       =      1.736\n",
      "ref_ali2d   #    53\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          17.729        Center y       =     16.936\n",
      "ref_ali2d   #    54\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -13.580        Center y       =      5.979\n",
      "ref_ali2d   #    55\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           6.043        Center y       =    -23.097\n",
      "ref_ali2d   #    56\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -13.013        Center y       =    -11.498\n",
      "ref_ali2d   #    57\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.980        Center y       =     -9.946\n",
      "ref_ali2d   #    58\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.482        Center y       =     11.102\n",
      "ref_ali2d   #    59\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.304        Center y       =     -5.387\n",
      "ref_ali2d   #    60\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.820        Center y       =     -7.596\n",
      "ref_ali2d   #    61\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           4.375        Center y       =      6.283\n",
      "ref_ali2d   #    62\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.418        Center y       =     24.350\n",
      "ref_ali2d   #    63\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.319        Center y       =      1.497\n",
      "ref_ali2d   #    64\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -11.565        Center y       =      3.041\n",
      "ref_ali2d   #    65\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          15.947        Center y       =     10.343\n",
      "ref_ali2d   #    66\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.078        Center y       =    -10.233\n",
      "ref_ali2d   #    67\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          17.804        Center y       =     12.798\n",
      "ref_ali2d   #    68\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.109        Center y       =      1.236\n",
      "ref_ali2d   #    69\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.547        Center y       =     -1.164\n",
      "ref_ali2d   #    70\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          21.458        Center y       =      1.812\n",
      "ref_ali2d   #    71\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.395        Center y       =     11.897\n",
      "ref_ali2d   #    72\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -6.975        Center y       =      2.667\n",
      "ref_ali2d   #    73\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -16.937        Center y       =    -13.748\n",
      "ref_ali2d   #    74\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.929        Center y       =      0.951\n",
      "ref_ali2d   #    75\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -13.546        Center y       =    -14.557\n",
      "ref_ali2d   #    76\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.553        Center y       =     -7.716\n",
      "ref_ali2d   #    77\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          15.615        Center y       =      6.942\n",
      "ref_ali2d   #    78\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.149        Center y       =      3.471\n",
      "ref_ali2d   #    79\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.523        Center y       =      4.234\n",
      "ref_ali2d   #    80\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -17.976        Center y       =     -9.789\n",
      "ref_ali2d   #    81\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -5.802        Center y       =    -21.479\n",
      "ref_ali2d   #    82\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.776        Center y       =    -20.754\n",
      "ref_ali2d   #    83\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           6.229        Center y       =     -1.270\n",
      "ref_ali2d   #    84\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -23.736        Center y       =      6.747\n",
      "ref_ali2d   #    85\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           4.582        Center y       =     -0.152\n",
      "ref_ali2d   #    86\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.976        Center y       =    -21.460\n",
      "ref_ali2d   #    87\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.478        Center y       =    -11.942\n",
      "ref_ali2d   #    88\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.349        Center y       =     -5.060\n",
      "ref_ali2d   #    89\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.772        Center y       =     -2.959\n",
      "ref_ali2d   #    90\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -25.964        Center y       =      9.054\n",
      "ref_ali2d   #    91\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -6.561        Center y       =      4.487\n",
      "ref_ali2d   #    92\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.785        Center y       =     -4.616\n",
      "ref_ali2d   #    93\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.559        Center y       =      0.046\n",
      "ref_ali2d   #    94\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -6.082        Center y       =     -7.303\n",
      "ref_ali2d   #    95\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.528        Center y       =      5.627\n",
      "ref_ali2d   #    96\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.688        Center y       =     21.651\n",
      "ref_ali2d   #    97\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -22.445        Center y       =     12.703\n",
      "ref_ali2d   #    98\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.914        Center y       =     -1.677\n",
      "ref_ali2d   #    99\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.136        Center y       =     -1.709\n",
      "ITERATION #  2        1\n",
      "\n",
      "   group #  0   number of particles =       3\n",
      "   group #  1   number of particles =      25\n",
      "   group #  2   number of particles =     147\n",
      "   group #  3   number of particles =      13\n",
      "   group #  4   number of particles =       1\n",
      "   group #  5   number of particles =      18\n",
      "   group #  6   number of particles =      64\n",
      "   group #  7   number of particles =       4\n",
      "   group #  8   number of particles =      35\n",
      "   group #  9   number of particles =      45\n",
      "   group # 10   number of particles =      18\n",
      "   group # 11   number of particles =      28\n",
      "   group # 12   number of particles =      15\n",
      "   group # 13   number of particles =     350\n",
      "   group # 14   number of particles =     629\n",
      "   group # 15   number of particles =      60\n",
      "   group # 16   number of particles =      87\n",
      "   group # 17   number of particles =      47\n",
      "   group # 18   number of particles =      74\n",
      "   group # 19   number of particles =     190\n",
      "   group # 20   number of particles =      11\n",
      "   group # 21   number of particles =       2\n",
      "   group # 22   number of particles =     189\n",
      "   group # 23   number of particles =       4\n",
      "   group # 24   number of particles =     216\n",
      "   group # 25   number of particles =      69\n",
      "   group # 26   number of particles =     148\n",
      "   group # 27   number of particles =       7\n",
      "   group # 28   number of particles =       5\n",
      "   group # 29   number of particles =      36\n",
      "   group # 30   number of particles =     540\n",
      "   group # 31   number of particles =      26\n",
      "   group # 32   number of particles =      36\n",
      "   group # 33   number of particles =     142\n",
      "   group # 34   number of particles =      18\n",
      "   group # 35   number of particles =     281\n",
      "   group # 36   number of particles =       2\n",
      "   group # 37   number of particles =      43\n",
      "   group # 38   number of particles =     103\n",
      "   group # 39   number of particles =     340\n",
      "   group # 40   number of particles =      19\n",
      "   group # 41   number of particles =       7\n",
      "   group # 42   number of particles =      47\n",
      "   group # 43   number of particles =     446\n",
      "   group # 44   number of particles =     153\n",
      "   group # 45   number of particles =     104\n",
      "   group # 46   number of particles =      33\n",
      "   group # 47   number of particles =       2\n",
      "   group # 48   number of particles =     118\n",
      "   group # 49   number of particles =       0\n",
      "[MREF-ALIGN][GPU0][============--------------------------------------]~[5/20]~[25.00%]\n",
      "[MREF-ALIGN][GPU0][===============-----------------------------------]~[6/20]~[30.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #   100\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          13.236        Center y       =     -5.829\n",
      "ref_ali2d   #   101\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          13.647        Center y       =      0.354\n",
      "ref_ali2d   #   102\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.288        Center y       =     -1.759\n",
      "ref_ali2d   #   103\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -20.001        Center y       =    -14.274\n",
      "ref_ali2d   #   104\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.830        Center y       =     -8.149\n",
      "ref_ali2d   #   105\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.888        Center y       =     19.549\n",
      "ref_ali2d   #   106\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.612        Center y       =      7.488\n",
      "ref_ali2d   #   107\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.756        Center y       =     12.444\n",
      "ref_ali2d   #   108\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.522        Center y       =    -10.736\n",
      "ref_ali2d   #   109\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.078        Center y       =      5.261\n",
      "ref_ali2d   #   110\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           5.204        Center y       =      2.747\n",
      "ref_ali2d   #   111\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.253        Center y       =     -5.760\n",
      "ref_ali2d   #   112\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.183        Center y       =    -23.250\n",
      "ref_ali2d   #   113\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.096        Center y       =     -0.344\n",
      "ref_ali2d   #   114\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.576        Center y       =     -3.168\n",
      "ref_ali2d   #   115\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -16.189        Center y       =     -8.444\n",
      "ref_ali2d   #   116\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.536        Center y       =      4.848\n",
      "ref_ali2d   #   117\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -16.560        Center y       =     -8.407\n",
      "ref_ali2d   #   118\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.267        Center y       =     -0.403\n",
      "ref_ali2d   #   119\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.513        Center y       =     -0.014\n",
      "ref_ali2d   #   120\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -20.909        Center y       =      0.391\n",
      "ref_ali2d   #   121\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -5.208        Center y       =     27.092\n",
      "ref_ali2d   #   122\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.404        Center y       =     -1.610\n",
      "ref_ali2d   #   123\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -9.546        Center y       =      1.482\n",
      "ref_ali2d   #   124\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.644        Center y       =     -0.947\n",
      "ref_ali2d   #   125\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.368        Center y       =     11.989\n",
      "ref_ali2d   #   126\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.614        Center y       =      3.230\n",
      "ref_ali2d   #   127\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.599        Center y       =     -4.435\n",
      "ref_ali2d   #   128\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.715        Center y       =     -2.149\n",
      "ref_ali2d   #   129\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.622        Center y       =     -2.851\n",
      "ref_ali2d   #   130\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          18.628        Center y       =      7.535\n",
      "ref_ali2d   #   131\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           5.802        Center y       =     20.182\n",
      "ref_ali2d   #   132\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.880        Center y       =     21.626\n",
      "ref_ali2d   #   133\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.506        Center y       =     -0.992\n",
      "ref_ali2d   #   134\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          24.509        Center y       =     -6.086\n",
      "ref_ali2d   #   135\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.232        Center y       =      0.113\n",
      "ref_ali2d   #   136\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -24.030        Center y       =     10.322\n",
      "ref_ali2d   #   137\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.632        Center y       =      8.183\n",
      "ref_ali2d   #   138\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.762        Center y       =     -0.081\n",
      "ref_ali2d   #   139\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.278        Center y       =      0.773\n",
      "ref_ali2d   #   140\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          23.184        Center y       =     -6.676\n",
      "ref_ali2d   #   141\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.258        Center y       =     -1.344\n",
      "ref_ali2d   #   142\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.104        Center y       =      0.863\n",
      "ref_ali2d   #   143\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.878        Center y       =      1.814\n",
      "ref_ali2d   #   144\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.171        Center y       =      3.977\n",
      "ref_ali2d   #   145\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.924        Center y       =     -2.971\n",
      "ref_ali2d   #   146\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.512        Center y       =    -19.611\n",
      "ref_ali2d   #   147\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -13.842        Center y       =     -5.344\n",
      "ref_ali2d   #   148\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.528        Center y       =     -1.219\n",
      "ref_ali2d   #   149\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          11.777        Center y       =      2.569\n",
      "ITERATION #  3        1\n",
      "\n",
      "   group #  0   number of particles =       0\n",
      "   group #  1   number of particles =      67\n",
      "   group #  2   number of particles =     234\n",
      "   group #  3   number of particles =      64\n",
      "   group #  4   number of particles =       0\n",
      "   group #  5   number of particles =      40\n",
      "   group #  6   number of particles =     126\n",
      "   group #  7   number of particles =      17\n",
      "   group #  8   number of particles =      29\n",
      "   group #  9   number of particles =      67\n",
      "   group # 10   number of particles =      62\n",
      "   group # 11   number of particles =      52\n",
      "   group # 12   number of particles =       9\n",
      "   group # 13   number of particles =     394\n",
      "   group # 14   number of particles =      80\n",
      "   group # 15   number of particles =     108\n",
      "   group # 16   number of particles =      63\n",
      "   group # 17   number of particles =     273\n",
      "   group # 18   number of particles =     293\n",
      "   group # 19   number of particles =     267\n",
      "   group # 20   number of particles =      22\n",
      "   group # 21   number of particles =       0\n",
      "   group # 22   number of particles =      70\n",
      "   group # 23   number of particles =       0\n",
      "   group # 24   number of particles =     125\n",
      "   group # 25   number of particles =      77\n",
      "   group # 26   number of particles =      92\n",
      "   group # 27   number of particles =      10\n",
      "   group # 28   number of particles =      95\n",
      "   group # 29   number of particles =     148\n",
      "   group # 30   number of particles =      68\n",
      "   group # 31   number of particles =      49\n",
      "   group # 32   number of particles =     424\n",
      "   group # 33   number of particles =      35\n",
      "   group # 34   number of particles =      45\n",
      "   group # 35   number of particles =      97\n",
      "   group # 36   number of particles =       0\n",
      "   group # 37   number of particles =      47\n",
      "   group # 38   number of particles =     104\n",
      "   group # 39   number of particles =     269\n",
      "   group # 40   number of particles =       7\n",
      "   group # 41   number of particles =      23\n",
      "   group # 42   number of particles =     108\n",
      "   group # 43   number of particles =     366\n",
      "   group # 44   number of particles =      86\n",
      "   group # 45   number of particles =      76\n",
      "   group # 46   number of particles =      84\n",
      "   group # 47   number of particles =       1\n",
      "   group # 48   number of particles =     225\n",
      "   group # 49   number of particles =       2\n",
      "[MREF-ALIGN][GPU0][=================---------------------------------]~[7/20]~[35.00%]\n",
      "[MREF-ALIGN][GPU0][====================------------------------------]~[8/20]~[40.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #   150\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.878        Center y       =     -6.533\n",
      "ref_ali2d   #   151\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.198        Center y       =     -0.334\n",
      "ref_ali2d   #   152\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.961        Center y       =      0.546\n",
      "ref_ali2d   #   153\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          21.129        Center y       =      7.429\n",
      "ref_ali2d   #   154\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          14.335        Center y       =    -14.851\n",
      "ref_ali2d   #   155\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.792        Center y       =    -20.885\n",
      "ref_ali2d   #   156\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.956        Center y       =     -7.397\n",
      "ref_ali2d   #   157\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.618        Center y       =     -7.392\n",
      "ref_ali2d   #   158\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.320        Center y       =      8.047\n",
      "ref_ali2d   #   159\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.154        Center y       =     -2.873\n",
      "ref_ali2d   #   160\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.973        Center y       =     -0.599\n",
      "ref_ali2d   #   161\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.037        Center y       =      2.386\n",
      "ref_ali2d   #   162\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.389        Center y       =     23.432\n",
      "ref_ali2d   #   163\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.929        Center y       =     -1.186\n",
      "ref_ali2d   #   164\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -9.026        Center y       =      4.703\n",
      "ref_ali2d   #   165\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          11.467        Center y       =      8.385\n",
      "ref_ali2d   #   166\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.394        Center y       =     -2.666\n",
      "ref_ali2d   #   167\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          16.713        Center y       =      4.223\n",
      "ref_ali2d   #   168\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.878        Center y       =     -1.259\n",
      "ref_ali2d   #   169\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.038        Center y       =      0.788\n",
      "ref_ali2d   #   170\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          24.185        Center y       =      6.756\n",
      "ref_ali2d   #   171\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          34.751        Center y       =      2.932\n",
      "ref_ali2d   #   172\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.889        Center y       =      1.767\n",
      "ref_ali2d   #   173\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.309        Center y       =    -24.506\n",
      "ref_ali2d   #   174\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.386        Center y       =      1.841\n",
      "ref_ali2d   #   175\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.809        Center y       =     -8.857\n",
      "ref_ali2d   #   176\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.816        Center y       =     -1.823\n",
      "ref_ali2d   #   177\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.554        Center y       =      5.310\n",
      "ref_ali2d   #   178\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.306        Center y       =      0.179\n",
      "ref_ali2d   #   179\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.459        Center y       =      2.185\n",
      "ref_ali2d   #   180\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -18.919        Center y       =     -5.657\n",
      "ref_ali2d   #   181\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.574        Center y       =    -19.641\n",
      "ref_ali2d   #   182\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.610        Center y       =    -22.267\n",
      "ref_ali2d   #   183\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.311        Center y       =      2.181\n",
      "ref_ali2d   #   184\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -22.824        Center y       =      6.275\n",
      "ref_ali2d   #   185\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.835        Center y       =     -0.457\n",
      "ref_ali2d   #   186\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.922        Center y       =     -7.494\n",
      "ref_ali2d   #   187\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           4.568        Center y       =     -5.550\n",
      "ref_ali2d   #   188\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.525        Center y       =     -2.289\n",
      "ref_ali2d   #   189\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.190        Center y       =     -0.301\n",
      "ref_ali2d   #   190\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -12.507        Center y       =     13.985\n",
      "ref_ali2d   #   191\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.950        Center y       =      2.655\n",
      "ref_ali2d   #   192\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.196        Center y       =     -1.334\n",
      "ref_ali2d   #   193\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.012        Center y       =     -0.412\n",
      "ref_ali2d   #   194\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.389        Center y       =     -3.334\n",
      "ref_ali2d   #   195\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.754        Center y       =      2.070\n",
      "ref_ali2d   #   196\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.843        Center y       =     18.120\n",
      "ref_ali2d   #   197\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.466        Center y       =     12.559\n",
      "ref_ali2d   #   198\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.274        Center y       =      0.879\n",
      "ref_ali2d   #   199\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.063        Center y       =      9.321\n",
      "ITERATION #  4        1\n",
      "\n",
      "   group #  0   number of particles =       2\n",
      "   group #  1   number of particles =      41\n",
      "   group #  2   number of particles =     258\n",
      "   group #  3   number of particles =      10\n",
      "   group #  4   number of particles =       0\n",
      "   group #  5   number of particles =       4\n",
      "   group #  6   number of particles =      22\n",
      "   group #  7   number of particles =      16\n",
      "   group #  8   number of particles =     455\n",
      "   group #  9   number of particles =      24\n",
      "   group # 10   number of particles =      91\n",
      "   group # 11   number of particles =     162\n",
      "   group # 12   number of particles =       4\n",
      "   group # 13   number of particles =     110\n",
      "   group # 14   number of particles =     233\n",
      "   group # 15   number of particles =       9\n",
      "   group # 16   number of particles =      69\n",
      "   group # 17   number of particles =      29\n",
      "   group # 18   number of particles =     199\n",
      "   group # 19   number of particles =     258\n",
      "   group # 20   number of particles =       4\n",
      "   group # 21   number of particles =       0\n",
      "   group # 22   number of particles =     130\n",
      "   group # 23   number of particles =       1\n",
      "   group # 24   number of particles =     112\n",
      "   group # 25   number of particles =      10\n",
      "   group # 26   number of particles =     218\n",
      "   group # 27   number of particles =      12\n",
      "   group # 28   number of particles =     288\n",
      "   group # 29   number of particles =     238\n",
      "   group # 30   number of particles =     406\n",
      "   group # 31   number of particles =      19\n",
      "   group # 32   number of particles =      27\n",
      "   group # 33   number of particles =      35\n",
      "   group # 34   number of particles =      20\n",
      "   group # 35   number of particles =      84\n",
      "   group # 36   number of particles =       0\n",
      "   group # 37   number of particles =      34\n",
      "   group # 38   number of particles =     105\n",
      "   group # 39   number of particles =     218\n",
      "   group # 40   number of particles =       1\n",
      "   group # 41   number of particles =      32\n",
      "   group # 42   number of particles =     174\n",
      "   group # 43   number of particles =     349\n",
      "   group # 44   number of particles =     102\n",
      "   group # 45   number of particles =     190\n",
      "   group # 46   number of particles =      21\n",
      "   group # 47   number of particles =       0\n",
      "   group # 48   number of particles =     174\n",
      "   group # 49   number of particles =       0\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[MREF-ALIGN][GPU0][======================----------------------------]~[9/20]~[45.00%]\n",
      "[MREF-ALIGN][GPU0][=========================-------------------------]~[10/20]~[50.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #   200\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -1.724        Center y       =     -3.632\n",
      "ref_ali2d   #   201\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           7.577        Center y       =      0.023\n",
      "ref_ali2d   #   202\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -1.118        Center y       =     -0.944\n",
      "ref_ali2d   #   203\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =         -23.936        Center y       =     -4.304\n",
      "ref_ali2d   #   204\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =         -21.480        Center y       =    -10.347\n",
      "ref_ali2d   #   205\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           0.819        Center y       =     22.485\n",
      "ref_ali2d   #   206\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           5.985        Center y       =      5.627\n",
      "ref_ali2d   #   207\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           3.651        Center y       =      4.987\n",
      "ref_ali2d   #   208\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -9.324        Center y       =     -7.589\n",
      "ref_ali2d   #   209\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           1.219        Center y       =      2.454\n",
      "ref_ali2d   #   210\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           0.961        Center y       =      0.267\n",
      "ref_ali2d   #   211\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           0.213        Center y       =     -1.397\n",
      "ref_ali2d   #   212\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -5.854        Center y       =    -30.477\n",
      "ref_ali2d   #   213\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -1.468        Center y       =      1.664\n",
      "ref_ali2d   #   214\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           7.761        Center y       =     -5.188\n",
      "ref_ali2d   #   215\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -8.922        Center y       =     -7.505\n",
      "ref_ali2d   #   216\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -0.448        Center y       =      3.083\n",
      "ref_ali2d   #   217\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =         -15.441        Center y       =     -2.689\n",
      "ref_ali2d   #   218\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           2.627        Center y       =      1.246\n",
      "ref_ali2d   #   219\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -0.594        Center y       =     -0.429\n",
      "ref_ali2d   #   220\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           7.100        Center y       =    -23.359\n",
      "ref_ali2d   #   221\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          11.078        Center y       =      3.875\n",
      "ref_ali2d   #   222\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           0.332        Center y       =     -0.580\n",
      "ref_ali2d   #   223\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          14.703        Center y       =    -12.360\n",
      "ref_ali2d   #   224\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           0.035        Center y       =     -1.174\n",
      "ref_ali2d   #   225\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          10.552        Center y       =      4.365\n",
      "ref_ali2d   #   226\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           1.044        Center y       =      1.897\n",
      "ref_ali2d   #   227\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           2.877        Center y       =     -2.015\n",
      "ref_ali2d   #   228\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -1.250        Center y       =      0.576\n",
      "ref_ali2d   #   229\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -0.376        Center y       =     -1.471\n",
      "ref_ali2d   #   230\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          20.425        Center y       =      2.826\n",
      "ref_ali2d   #   231\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           4.987        Center y       =     19.970\n",
      "ref_ali2d   #   232\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           5.419        Center y       =     23.279\n",
      "ref_ali2d   #   233\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -3.307        Center y       =     -2.493\n",
      "ref_ali2d   #   234\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          23.671        Center y       =     -6.352\n",
      "ref_ali2d   #   235\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           1.062        Center y       =     -0.350\n",
      "ref_ali2d   #   236\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -0.556        Center y       =     -5.222\n",
      "ref_ali2d   #   237\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -3.108        Center y       =      5.190\n",
      "ref_ali2d   #   238\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -1.968        Center y       =      1.466\n",
      "ref_ali2d   #   239\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           1.184        Center y       =      0.019\n",
      "ref_ali2d   #   240\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          16.776        Center y       =     -6.479\n",
      "ref_ali2d   #   241\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           2.068        Center y       =     -4.281\n",
      "ref_ali2d   #   242\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           2.274        Center y       =      0.829\n",
      "ref_ali2d   #   243\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -0.127        Center y       =      0.501\n",
      "ref_ali2d   #   244\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =           0.938        Center y       =      3.205\n",
      "ref_ali2d   #   245\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -3.106        Center y       =     -2.206\n",
      "ref_ali2d   #   246\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -1.280        Center y       =    -16.321\n",
      "ref_ali2d   #   247\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =         -18.324        Center y       =      2.516\n",
      "ref_ali2d   #   248\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =          -0.302        Center y       =      0.078\n",
      "ref_ali2d   #   249\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.191\n",
      "Center x =         -10.626        Center y       =    -10.057\n",
      "ITERATION #  5        1\n",
      "\n",
      "   group #  0   number of particles =       0\n",
      "   group #  1   number of particles =     127\n",
      "   group #  2   number of particles =     230\n",
      "   group #  3   number of particles =       9\n",
      "   group #  4   number of particles =       1\n",
      "   group #  5   number of particles =       4\n",
      "   group #  6   number of particles =      38\n",
      "   group #  7   number of particles =      28\n",
      "   group #  8   number of particles =      25\n",
      "   group #  9   number of particles =      18\n",
      "   group # 10   number of particles =     108\n",
      "   group # 11   number of particles =     191\n",
      "   group # 12   number of particles =       0\n",
      "   group # 13   number of particles =      70\n",
      "   group # 14   number of particles =      76\n",
      "   group # 15   number of particles =      53\n",
      "   group # 16   number of particles =      99\n",
      "   group # 17   number of particles =     162\n",
      "   group # 18   number of particles =     388\n",
      "   group # 19   number of particles =     235\n",
      "   group # 20   number of particles =       1\n",
      "   group # 21   number of particles =       0\n",
      "   group # 22   number of particles =     142\n",
      "   group # 23   number of particles =       0\n",
      "   group # 24   number of particles =      79\n",
      "   group # 25   number of particles =      33\n",
      "   group # 26   number of particles =     200\n",
      "   group # 27   number of particles =       6\n",
      "   group # 28   number of particles =     327\n",
      "   group # 29   number of particles =     331\n",
      "   group # 30   number of particles =      58\n",
      "   group # 31   number of particles =      75\n",
      "   group # 32   number of particles =     315\n",
      "   group # 33   number of particles =      60\n",
      "   group # 34   number of particles =      24\n",
      "   group # 35   number of particles =      65\n",
      "   group # 36   number of particles =       0\n",
      "   group # 37   number of particles =      41\n",
      "   group # 38   number of particles =      74\n",
      "   group # 39   number of particles =     183\n",
      "   group # 40   number of particles =       0\n",
      "   group # 41   number of particles =     166\n",
      "   group # 42   number of particles =     142\n",
      "   group # 43   number of particles =     321\n",
      "   group # 44   number of particles =     145\n",
      "   group # 45   number of particles =     154\n",
      "   group # 46   number of particles =      28\n",
      "   group # 47   number of particles =       0\n",
      "   group # 48   number of particles =     167\n",
      "   group # 49   number of particles =       1\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[MREF-ALIGN][GPU0][===========================-----------------------]~[11/20]~[55.00%]\n",
      "[MREF-ALIGN][GPU0][==============================--------------------]~[12/20]~[60.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #   250\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -17.916        Center y       =    -28.151\n",
      "ref_ali2d   #   251\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.537        Center y       =      0.545\n",
      "ref_ali2d   #   252\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.776        Center y       =      0.783\n",
      "ref_ali2d   #   253\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          18.390        Center y       =      1.368\n",
      "ref_ali2d   #   254\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -16.460        Center y       =     -6.198\n",
      "ref_ali2d   #   255\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.613        Center y       =    -11.378\n",
      "ref_ali2d   #   256\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.024        Center y       =     -5.588\n",
      "ref_ali2d   #   257\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.398        Center y       =     -2.245\n",
      "ref_ali2d   #   258\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.597        Center y       =      8.044\n",
      "ref_ali2d   #   259\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.820        Center y       =     -1.859\n",
      "ref_ali2d   #   260\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.077        Center y       =     -0.312\n",
      "ref_ali2d   #   261\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.140        Center y       =      1.429\n",
      "ref_ali2d   #   262\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -15.857        Center y       =    -15.257\n",
      "ref_ali2d   #   263\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.583        Center y       =      0.128\n",
      "ref_ali2d   #   264\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -5.584        Center y       =      6.215\n",
      "ref_ali2d   #   265\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.413        Center y       =      5.751\n",
      "ref_ali2d   #   266\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.135        Center y       =     -2.364\n",
      "ref_ali2d   #   267\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          15.961        Center y       =      0.300\n",
      "ref_ali2d   #   268\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.736        Center y       =     -1.231\n",
      "ref_ali2d   #   269\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.737        Center y       =      0.006\n",
      "ref_ali2d   #   270\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.033        Center y       =     20.201\n",
      "ref_ali2d   #   271\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -19.543        Center y       =    -18.525\n",
      "ref_ali2d   #   272\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.217        Center y       =      0.524\n",
      "ref_ali2d   #   273\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -6.456        Center y       =    -10.293\n",
      "ref_ali2d   #   274\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.331        Center y       =      1.748\n",
      "ref_ali2d   #   275\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -12.334        Center y       =     -9.617\n",
      "ref_ali2d   #   276\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.629        Center y       =     -1.679\n",
      "ref_ali2d   #   277\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.513        Center y       =      0.047\n",
      "ref_ali2d   #   278\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.063        Center y       =     -0.848\n",
      "ref_ali2d   #   279\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.140        Center y       =      1.549\n",
      "ref_ali2d   #   280\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -21.469        Center y       =     -0.727\n",
      "ref_ali2d   #   281\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -6.551        Center y       =    -20.366\n",
      "ref_ali2d   #   282\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.411        Center y       =    -24.581\n",
      "ref_ali2d   #   283\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.189        Center y       =      1.582\n",
      "ref_ali2d   #   284\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -25.932        Center y       =      7.124\n",
      "ref_ali2d   #   285\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.291        Center y       =      0.827\n",
      "ref_ali2d   #   286\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.255        Center y       =      6.088\n",
      "ref_ali2d   #   287\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.202        Center y       =     -2.847\n",
      "ref_ali2d   #   288\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.683        Center y       =     -0.961\n",
      "ref_ali2d   #   289\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.706        Center y       =     -0.110\n",
      "ref_ali2d   #   290\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.234        Center y       =      0.953\n",
      "ref_ali2d   #   291\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.027        Center y       =      2.139\n",
      "ref_ali2d   #   292\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.070        Center y       =     -0.574\n",
      "ref_ali2d   #   293\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.109        Center y       =     -0.286\n",
      "ref_ali2d   #   294\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.763        Center y       =     -2.956\n",
      "ref_ali2d   #   295\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.993        Center y       =      2.527\n",
      "ref_ali2d   #   296\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.084        Center y       =     15.949\n",
      "ref_ali2d   #   297\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           5.881        Center y       =      0.070\n",
      "ref_ali2d   #   298\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.073        Center y       =      0.133\n",
      "ref_ali2d   #   299\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.293        Center y       =    -15.316\n",
      "ITERATION #  6        1\n",
      "\n",
      "   group #  0   number of particles =       1\n",
      "   group #  1   number of particles =      53\n",
      "   group #  2   number of particles =     207\n",
      "   group #  3   number of particles =       3\n",
      "   group #  4   number of particles =       0\n",
      "   group #  5   number of particles =       0\n",
      "   group #  6   number of particles =      53\n",
      "   group #  7   number of particles =      39\n",
      "   group #  8   number of particles =     153\n",
      "   group #  9   number of particles =      19\n",
      "   group # 10   number of particles =     105\n",
      "   group # 11   number of particles =     179\n",
      "   group # 12   number of particles =       0\n",
      "   group # 13   number of particles =      80\n",
      "   group # 14   number of particles =     159\n",
      "   group # 15   number of particles =      66\n",
      "   group # 16   number of particles =      90\n",
      "   group # 17   number of particles =      31\n",
      "   group # 18   number of particles =     329\n",
      "   group # 19   number of particles =     270\n",
      "   group # 20   number of particles =       0\n",
      "   group # 21   number of particles =       0\n",
      "   group # 22   number of particles =     138\n",
      "   group # 23   number of particles =       0\n",
      "   group # 24   number of particles =      82\n",
      "   group # 25   number of particles =      15\n",
      "   group # 26   number of particles =     202\n",
      "   group # 27   number of particles =      10\n",
      "   group # 28   number of particles =     315\n",
      "   group # 29   number of particles =     352\n",
      "   group # 30   number of particles =     354\n",
      "   group # 31   number of particles =      18\n",
      "   group # 32   number of particles =      24\n",
      "   group # 33   number of particles =      57\n",
      "   group # 34   number of particles =      11\n",
      "   group # 35   number of particles =      60\n",
      "   group # 36   number of particles =       1\n",
      "   group # 37   number of particles =      40\n",
      "   group # 38   number of particles =      81\n",
      "   group # 39   number of particles =     178\n",
      "   group # 40   number of particles =       0\n",
      "   group # 41   number of particles =     163\n",
      "   group # 42   number of particles =     177\n",
      "   group # 43   number of particles =     311\n",
      "   group # 44   number of particles =     145\n",
      "   group # 45   number of particles =     263\n",
      "   group # 46   number of particles =      21\n",
      "   group # 47   number of particles =       0\n",
      "   group # 48   number of particles =     144\n",
      "   group # 49   number of particles =       1\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[MREF-ALIGN][GPU0][================================------------------]~[13/20]~[65.00%]\n",
      "[MREF-ALIGN][GPU0][===================================---------------]~[14/20]~[70.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #   300\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          25.023        Center y       =     -7.091\n",
      "ref_ali2d   #   301\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.691        Center y       =      0.184\n",
      "ref_ali2d   #   302\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.527        Center y       =     -0.581\n",
      "ref_ali2d   #   303\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -12.415        Center y       =    -24.329\n",
      "ref_ali2d   #   304\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -14.302        Center y       =     -6.752\n",
      "ref_ali2d   #   305\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.530        Center y       =     -3.832\n",
      "ref_ali2d   #   306\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.624        Center y       =      7.247\n",
      "ref_ali2d   #   307\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.839        Center y       =      2.177\n",
      "ref_ali2d   #   308\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.071        Center y       =     -6.874\n",
      "ref_ali2d   #   309\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.167        Center y       =      1.266\n",
      "ref_ali2d   #   310\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.195        Center y       =      0.008\n",
      "ref_ali2d   #   311\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.526        Center y       =     -1.032\n",
      "ref_ali2d   #   312\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.343        Center y       =    -24.065\n",
      "ref_ali2d   #   313\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.763        Center y       =      1.218\n",
      "ref_ali2d   #   314\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.829        Center y       =     -8.296\n",
      "ref_ali2d   #   315\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -8.619        Center y       =     -3.665\n",
      "ref_ali2d   #   316\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.053        Center y       =      2.084\n",
      "ref_ali2d   #   317\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -15.949        Center y       =      0.876\n",
      "ref_ali2d   #   318\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.428        Center y       =      1.871\n",
      "ref_ali2d   #   319\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.717        Center y       =     -0.178\n",
      "ref_ali2d   #   320\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -8.660        Center y       =     13.912\n",
      "ref_ali2d   #   321\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.516        Center y       =    -11.917\n",
      "ref_ali2d   #   322\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.086        Center y       =     -0.408\n",
      "ref_ali2d   #   323\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.233        Center y       =      5.603\n",
      "ref_ali2d   #   324\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.799        Center y       =     -0.927\n",
      "ref_ali2d   #   325\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          14.267        Center y       =     13.937\n",
      "ref_ali2d   #   326\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.480        Center y       =      1.160\n",
      "ref_ali2d   #   327\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.099        Center y       =     -0.034\n",
      "ref_ali2d   #   328\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.366        Center y       =      0.974\n",
      "ref_ali2d   #   329\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.251        Center y       =     -1.427\n",
      "ref_ali2d   #   330\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          22.335        Center y       =     -0.689\n",
      "ref_ali2d   #   331\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.038        Center y       =     21.224\n",
      "ref_ali2d   #   332\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.373        Center y       =     25.089\n",
      "ref_ali2d   #   333\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.618        Center y       =     -0.727\n",
      "ref_ali2d   #   334\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          27.917        Center y       =     -7.587\n",
      "ref_ali2d   #   335\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.898        Center y       =     -0.257\n",
      "ref_ali2d   #   336\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.613        Center y       =    -11.378\n",
      "ref_ali2d   #   337\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.946        Center y       =      2.401\n",
      "ref_ali2d   #   338\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.407        Center y       =      0.406\n",
      "ref_ali2d   #   339\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.894        Center y       =      0.301\n",
      "ref_ali2d   #   340\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.208        Center y       =     -8.544\n",
      "ref_ali2d   #   341\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.688        Center y       =     -2.226\n",
      "ref_ali2d   #   342\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.499        Center y       =      0.717\n",
      "ref_ali2d   #   343\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.084        Center y       =      0.284\n",
      "ref_ali2d   #   344\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.567        Center y       =      3.222\n",
      "ref_ali2d   #   345\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.128        Center y       =     -2.508\n",
      "ref_ali2d   #   346\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.716        Center y       =    -15.398\n",
      "ref_ali2d   #   347\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.253        Center y       =     -2.689\n",
      "ref_ali2d   #   348\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.022        Center y       =     -0.010\n",
      "ref_ali2d   #   349\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           6.540        Center y       =     18.591\n",
      "ITERATION #  7        1\n",
      "\n",
      "   group #  0   number of particles =       0\n",
      "   group #  1   number of particles =     178\n",
      "   group #  2   number of particles =     193\n",
      "   group #  3   number of particles =       0\n",
      "   group #  4   number of particles =       0\n",
      "   group #  5   number of particles =       0\n",
      "   group #  6   number of particles =      49\n",
      "   group #  7   number of particles =      41\n",
      "   group #  8   number of particles =      24\n",
      "   group #  9   number of particles =      18\n",
      "   group # 10   number of particles =     103\n",
      "   group # 11   number of particles =     168\n",
      "   group # 12   number of particles =       0\n",
      "   group # 13   number of particles =     106\n",
      "   group # 14   number of particles =      32\n",
      "   group # 15   number of particles =      54\n",
      "   group # 16   number of particles =      89\n",
      "   group # 17   number of particles =      96\n",
      "   group # 18   number of particles =     417\n",
      "   group # 19   number of particles =     279\n",
      "   group # 20   number of particles =       0\n",
      "   group # 21   number of particles =       0\n",
      "   group # 22   number of particles =     137\n",
      "   group # 23   number of particles =       0\n",
      "   group # 24   number of particles =      92\n",
      "   group # 25   number of particles =       5\n",
      "   group # 26   number of particles =     195\n",
      "   group # 27   number of particles =      16\n",
      "   group # 28   number of particles =     319\n",
      "   group # 29   number of particles =     391\n",
      "   group # 30   number of particles =      47\n",
      "   group # 31   number of particles =      82\n",
      "   group # 32   number of particles =     209\n",
      "   group # 33   number of particles =      61\n",
      "   group # 34   number of particles =       9\n",
      "   group # 35   number of particles =      59\n",
      "   group # 36   number of particles =       1\n",
      "   group # 37   number of particles =      42\n",
      "   group # 38   number of particles =      81\n",
      "   group # 39   number of particles =     174\n",
      "   group # 40   number of particles =       1\n",
      "   group # 41   number of particles =     224\n",
      "   group # 42   number of particles =     164\n",
      "   group # 43   number of particles =     309\n",
      "   group # 44   number of particles =     142\n",
      "   group # 45   number of particles =     227\n",
      "   group # 46   number of particles =      27\n",
      "   group # 47   number of particles =       1\n",
      "   group # 48   number of particles =     138\n",
      "   group # 49   number of particles =       0\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[MREF-ALIGN][GPU0][=====================================-------------]~[15/20]~[75.00%]\n",
      "[MREF-ALIGN][GPU0][========================================----------]~[16/20]~[80.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #   350\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.357        Center y       =     28.436\n",
      "ref_ali2d   #   351\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.568        Center y       =     -0.328\n",
      "ref_ali2d   #   352\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.257        Center y       =      0.694\n",
      "ref_ali2d   #   353\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.361        Center y       =     -5.850\n",
      "ref_ali2d   #   354\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           6.080        Center y       =    -14.149\n",
      "ref_ali2d   #   355\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -5.050        Center y       =     17.530\n",
      "ref_ali2d   #   356\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.705        Center y       =     -9.315\n",
      "ref_ali2d   #   357\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.056        Center y       =     -1.225\n",
      "ref_ali2d   #   358\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          10.914        Center y       =      6.351\n",
      "ref_ali2d   #   359\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.988        Center y       =     -0.910\n",
      "ref_ali2d   #   360\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.315        Center y       =     -0.400\n",
      "ref_ali2d   #   361\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.633        Center y       =      0.826\n",
      "ref_ali2d   #   362\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           5.786        Center y       =      5.135\n",
      "ref_ali2d   #   363\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.452        Center y       =     -0.717\n",
      "ref_ali2d   #   364\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.051        Center y       =      7.336\n",
      "ref_ali2d   #   365\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.486        Center y       =      1.556\n",
      "ref_ali2d   #   366\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.179        Center y       =     -1.846\n",
      "ref_ali2d   #   367\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          15.146        Center y       =     -4.319\n",
      "ref_ali2d   #   368\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.810        Center y       =     -2.061\n",
      "ref_ali2d   #   369\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.013        Center y       =      0.158\n",
      "ref_ali2d   #   370\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          17.581        Center y       =     -6.503\n",
      "ref_ali2d   #   371\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           4.403        Center y       =      4.397\n",
      "ref_ali2d   #   372\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.022        Center y       =      0.258\n",
      "ref_ali2d   #   373\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.932        Center y       =     -5.247\n",
      "ref_ali2d   #   374\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.762        Center y       =      2.769\n",
      "ref_ali2d   #   375\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -26.684        Center y       =     -1.485\n",
      "ref_ali2d   #   376\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.385        Center y       =     -0.764\n",
      "ref_ali2d   #   377\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -5.740        Center y       =     -0.564\n",
      "ref_ali2d   #   378\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.817        Center y       =     -0.936\n",
      "ref_ali2d   #   379\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.194        Center y       =      1.437\n",
      "ref_ali2d   #   380\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -22.807        Center y       =      1.690\n",
      "ref_ali2d   #   381\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.796        Center y       =    -21.904\n",
      "ref_ali2d   #   382\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -9.427        Center y       =    -25.479\n",
      "ref_ali2d   #   383\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.006        Center y       =      0.595\n",
      "ref_ali2d   #   384\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -27.739        Center y       =      6.256\n",
      "ref_ali2d   #   385\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.432        Center y       =      0.401\n",
      "ref_ali2d   #   386\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -12.663        Center y       =     -4.047\n",
      "ref_ali2d   #   387\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.382        Center y       =     -2.497\n",
      "ref_ali2d   #   388\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.221        Center y       =     -0.336\n",
      "ref_ali2d   #   389\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.759        Center y       =     -0.303\n",
      "ref_ali2d   #   390\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.474        Center y       =      3.266\n",
      "ref_ali2d   #   391\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.013        Center y       =      2.262\n",
      "ref_ali2d   #   392\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.385        Center y       =     -0.847\n",
      "ref_ali2d   #   393\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.043        Center y       =     -0.177\n",
      "ref_ali2d   #   394\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.500        Center y       =     -3.375\n",
      "ref_ali2d   #   395\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.624        Center y       =      2.825\n",
      "ref_ali2d   #   396\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.059        Center y       =     15.910\n",
      "ref_ali2d   #   397\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -25.484        Center y       =    -20.133\n",
      "ref_ali2d   #   398\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.034        Center y       =      0.283\n",
      "ref_ali2d   #   399\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -27.239        Center y       =      9.694\n",
      "ITERATION #  8        1\n",
      "\n",
      "   group #  0   number of particles =       0\n",
      "   group #  1   number of particles =     188\n",
      "   group #  2   number of particles =     189\n",
      "   group #  3   number of particles =       0\n",
      "   group #  4   number of particles =       0\n",
      "   group #  5   number of particles =       1\n",
      "   group #  6   number of particles =      32\n",
      "   group #  7   number of particles =      53\n",
      "   group #  8   number of particles =      47\n",
      "   group #  9   number of particles =      27\n",
      "   group # 10   number of particles =      99\n",
      "   group # 11   number of particles =     161\n",
      "   group # 12   number of particles =       0\n",
      "   group # 13   number of particles =     109\n",
      "   group # 14   number of particles =      29\n",
      "   group # 15   number of particles =      78\n",
      "   group # 16   number of particles =      88\n",
      "   group # 17   number of particles =      25\n",
      "   group # 18   number of particles =     350\n",
      "   group # 19   number of particles =     312\n",
      "   group # 20   number of particles =       0\n",
      "   group # 21   number of particles =       0\n",
      "   group # 22   number of particles =     136\n",
      "   group # 23   number of particles =       1\n",
      "   group # 24   number of particles =     130\n",
      "   group # 25   number of particles =       0\n",
      "   group # 26   number of particles =     191\n",
      "   group # 27   number of particles =      31\n",
      "   group # 28   number of particles =     324\n",
      "   group # 29   number of particles =     332\n",
      "   group # 30   number of particles =     313\n",
      "   group # 31   number of particles =      17\n",
      "   group # 32   number of particles =      23\n",
      "   group # 33   number of particles =      57\n",
      "   group # 34   number of particles =       8\n",
      "   group # 35   number of particles =      59\n",
      "   group # 36   number of particles =       1\n",
      "   group # 37   number of particles =      46\n",
      "   group # 38   number of particles =      82\n",
      "   group # 39   number of particles =     169\n",
      "   group # 40   number of particles =       0\n",
      "   group # 41   number of particles =     233\n",
      "   group # 42   number of particles =     175\n",
      "   group # 43   number of particles =     310\n",
      "   group # 44   number of particles =     144\n",
      "   group # 45   number of particles =     270\n",
      "   group # 46   number of particles =      23\n",
      "   group # 47   number of particles =       0\n",
      "   group # 48   number of particles =     137\n",
      "   group # 49   number of particles =       0\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[MREF-ALIGN][GPU0][==========================================--------]~[17/20]~[85.00%]\n",
      "[MREF-ALIGN][GPU0][=============================================-----]~[18/20]~[90.00%]\n",
      "===============End cupy average\n",
      "ref_ali2d   #   400\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.144        Center y       =      1.072\n",
      "ref_ali2d   #   401\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.263        Center y       =      0.398\n",
      "ref_ali2d   #   402\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.164        Center y       =     -0.512\n",
      "ref_ali2d   #   403\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.804        Center y       =    -24.837\n",
      "ref_ali2d   #   404\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.259        Center y       =    -10.603\n",
      "ref_ali2d   #   405\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.568        Center y       =    -26.400\n",
      "ref_ali2d   #   406\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.723        Center y       =     10.967\n",
      "ref_ali2d   #   407\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.948        Center y       =      1.158\n",
      "ref_ali2d   #   408\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -12.388        Center y       =     -3.564\n",
      "ref_ali2d   #   409\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.992        Center y       =      0.833\n",
      "ref_ali2d   #   410\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.306        Center y       =      0.414\n",
      "ref_ali2d   #   411\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.494        Center y       =     -0.751\n",
      "ref_ali2d   #   412\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.472        Center y       =    -23.751\n",
      "ref_ali2d   #   413\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.100        Center y       =      0.565\n",
      "ref_ali2d   #   414\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           4.039        Center y       =     -9.631\n",
      "ref_ali2d   #   415\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -8.000        Center y       =     -1.042\n",
      "ref_ali2d   #   416\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.368        Center y       =      1.815\n",
      "ref_ali2d   #   417\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -15.119        Center y       =      4.050\n",
      "ref_ali2d   #   418\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.570        Center y       =      2.198\n",
      "ref_ali2d   #   419\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.865        Center y       =     -0.593\n",
      "ref_ali2d   #   420\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          14.531        Center y       =     -1.764\n",
      "ref_ali2d   #   421\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -15.038        Center y       =      4.552\n",
      "ref_ali2d   #   422\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.243        Center y       =     -0.189\n",
      "ref_ali2d   #   423\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           3.375        Center y       =      2.494\n",
      "ref_ali2d   #   424\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.925        Center y       =     -2.359\n",
      "ref_ali2d   #   425\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          23.083        Center y       =      9.527\n",
      "ref_ali2d   #   426\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.317        Center y       =      0.542\n",
      "ref_ali2d   #   427\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.972        Center y       =      0.975\n",
      "ref_ali2d   #   428\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.111        Center y       =      1.341\n",
      "ref_ali2d   #   429\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.154        Center y       =     -1.540\n",
      "ref_ali2d   #   430\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          23.422        Center y       =     -2.094\n",
      "ref_ali2d   #   431\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           8.521        Center y       =     22.591\n",
      "ref_ali2d   #   432\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           9.667        Center y       =     25.342\n",
      "ref_ali2d   #   433\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.201        Center y       =     -0.565\n",
      "ref_ali2d   #   434\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          28.442        Center y       =     -5.714\n",
      "ref_ali2d   #   435\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.414        Center y       =      0.097\n",
      "ref_ali2d   #   436\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -16.707        Center y       =     18.041\n",
      "ref_ali2d   #   437\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.337        Center y       =      1.634\n",
      "ref_ali2d   #   438\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.178        Center y       =      0.175\n",
      "ref_ali2d   #   439\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.664        Center y       =      0.332\n",
      "ref_ali2d   #   440\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.724        Center y       =      6.548\n",
      "ref_ali2d   #   441\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.135        Center y       =     -2.237\n",
      "ref_ali2d   #   442\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.105        Center y       =      0.609\n",
      "ref_ali2d   #   443\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.078        Center y       =      0.090\n",
      "ref_ali2d   #   444\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.423        Center y       =      3.651\n",
      "ref_ali2d   #   445\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.350        Center y       =     -3.096\n",
      "ref_ali2d   #   446\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.306        Center y       =    -15.769\n",
      "ref_ali2d   #   447\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          17.727        Center y       =     14.077\n",
      "ref_ali2d   #   448\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.987        Center y       =      0.010\n",
      "ref_ali2d   #   449\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -20.365        Center y       =     -5.740\n",
      "ITERATION #  9        1\n",
      "\n",
      "   group #  0   number of particles =       0\n",
      "   group #  1   number of particles =     195\n",
      "   group #  2   number of particles =     186\n",
      "   group #  3   number of particles =       1\n",
      "   group #  4   number of particles =       0\n",
      "   group #  5   number of particles =       0\n",
      "   group #  6   number of particles =      18\n",
      "   group #  7   number of particles =      71\n",
      "   group #  8   number of particles =      17\n",
      "   group #  9   number of particles =      33\n",
      "   group # 10   number of particles =      99\n",
      "   group # 11   number of particles =     157\n",
      "   group # 12   number of particles =       0\n",
      "   group # 13   number of particles =     107\n",
      "   group # 14   number of particles =      30\n",
      "   group # 15   number of particles =      59\n",
      "   group # 16   number of particles =      89\n",
      "   group # 17   number of particles =      21\n",
      "   group # 18   number of particles =     347\n",
      "   group # 19   number of particles =     344\n",
      "   group # 20   number of particles =       0\n",
      "   group # 21   number of particles =       1\n",
      "   group # 22   number of particles =     134\n",
      "   group # 23   number of particles =       1\n",
      "   group # 24   number of particles =     137\n",
      "   group # 25   number of particles =       0\n",
      "   group # 26   number of particles =     185\n",
      "   group # 27   number of particles =      24\n",
      "   group # 28   number of particles =     333\n",
      "   group # 29   number of particles =     333\n",
      "   group # 30   number of particles =      44\n",
      "   group # 31   number of particles =      80\n",
      "   group # 32   number of particles =     230\n",
      "   group # 33   number of particles =      55\n",
      "   group # 34   number of particles =       7\n",
      "   group # 35   number of particles =      62\n",
      "   group # 36   number of particles =       0\n",
      "   group # 37   number of particles =      50\n",
      "   group # 38   number of particles =      82\n",
      "   group # 39   number of particles =     165\n",
      "   group # 40   number of particles =       0\n",
      "   group # 41   number of particles =     257\n",
      "   group # 42   number of particles =     181\n",
      "   group # 43   number of particles =     305\n",
      "   group # 44   number of particles =     146\n",
      "   group # 45   number of particles =     255\n",
      "   group # 46   number of particles =      22\n",
      "   group # 47   number of particles =       0\n",
      "   group # 48   number of particles =     137\n",
      "   group # 49   number of particles =       0\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[MREF-ALIGN][GPU0][===============================================---]~[19/20]~[95.00%]\n",
      "[MREF-ALIGN][GPU0][==================================================]~[20/20]~[100.00%]\n",
      "\n",
      "===============End cupy average\n",
      "ref_ali2d   #   450\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -8.548        Center y       =      4.758\n",
      "ref_ali2d   #   451\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.270        Center y       =     -0.122\n",
      "ref_ali2d   #   452\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.065        Center y       =      0.424\n",
      "ref_ali2d   #   453\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           1.070        Center y       =     17.648\n",
      "ref_ali2d   #   454\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.869        Center y       =     21.738\n",
      "ref_ali2d   #   455\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.517        Center y       =     -9.693\n",
      "ref_ali2d   #   456\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -15.330        Center y       =     -6.593\n",
      "ref_ali2d   #   457\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.697        Center y       =     -0.990\n",
      "ref_ali2d   #   458\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          13.961        Center y       =      3.789\n",
      "ref_ali2d   #   459\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.128        Center y       =     -2.456\n",
      "ref_ali2d   #   460\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.317        Center y       =     -0.561\n",
      "ref_ali2d   #   461\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.448        Center y       =      0.607\n",
      "ref_ali2d   #   462\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -7.452        Center y       =     11.425\n",
      "ref_ali2d   #   463\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.292        Center y       =     -0.332\n",
      "ref_ali2d   #   464\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -4.029        Center y       =     10.383\n",
      "ref_ali2d   #   465\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           7.660        Center y       =      0.083\n",
      "ref_ali2d   #   466\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.491        Center y       =     -1.628\n",
      "ref_ali2d   #   467\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          13.415        Center y       =     -5.623\n",
      "ref_ali2d   #   468\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.483        Center y       =     -2.217\n",
      "ref_ali2d   #   469\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.961        Center y       =      0.766\n",
      "ref_ali2d   #   470\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -15.879        Center y       =      8.121\n",
      "ref_ali2d   #   471\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          15.265        Center y       =     -1.151\n",
      "ref_ali2d   #   472\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.264        Center y       =      0.070\n",
      "ref_ali2d   #   473\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -13.740        Center y       =    -15.648\n",
      "ref_ali2d   #   474\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.958        Center y       =      3.126\n",
      "ref_ali2d   #   475\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -12.223        Center y       =     -8.038\n",
      "ref_ali2d   #   476\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.299        Center y       =     -0.268\n",
      "ref_ali2d   #   477\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.130        Center y       =     -0.877\n",
      "ref_ali2d   #   478\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.392        Center y       =     -1.526\n",
      "ref_ali2d   #   479\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           4.158        Center y       =      1.575\n",
      "ref_ali2d   #   480\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -23.756        Center y       =      2.599\n",
      "ref_ali2d   #   481\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -8.722        Center y       =    -22.870\n",
      "ref_ali2d   #   482\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -10.085        Center y       =    -25.189\n",
      "ref_ali2d   #   483\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.826        Center y       =     -0.608\n",
      "ref_ali2d   #   484\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.985        Center y       =     24.214\n",
      "ref_ali2d   #   485\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.528        Center y       =     -0.606\n",
      "ref_ali2d   #   486\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          13.005        Center y       =      8.491\n",
      "ref_ali2d   #   487\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.450        Center y       =     -2.105\n",
      "ref_ali2d   #   488\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.061        Center y       =     -0.186\n",
      "ref_ali2d   #   489\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -0.620        Center y       =     -0.139\n",
      "ref_ali2d   #   490\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -27.471        Center y       =     -1.804\n",
      "ref_ali2d   #   491\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -2.307        Center y       =      2.853\n",
      "ref_ali2d   #   492\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.577        Center y       =     -0.509\n",
      "ref_ali2d   #   493\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.116        Center y       =     -0.007\n",
      "ref_ali2d   #   494\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -1.283        Center y       =     -3.521\n",
      "ref_ali2d   #   495\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           2.599        Center y       =      3.142\n",
      "ref_ali2d   #   496\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          -3.108        Center y       =     16.777\n",
      "ref_ali2d   #   497\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =         -33.310        Center y       =    -13.062\n",
      "ref_ali2d   #   498\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =           0.911        Center y       =     -0.072\n",
      "ref_ali2d   #   499\n",
      "Tangent filter:  cut-off frequency =      0.120        fall-off =      0.200\n",
      "Center x =          12.293        Center y       =     -6.686\n",
      "ITERATION # 10        1\n",
      "\n",
      "   group #  0   number of particles =       1\n",
      "   group #  1   number of particles =     196\n",
      "   group #  2   number of particles =     178\n",
      "   group #  3   number of particles =       0\n",
      "   group #  4   number of particles =       0\n",
      "   group #  5   number of particles =       0\n",
      "   group #  6   number of particles =       4\n",
      "   group #  7   number of particles =      77\n",
      "   group #  8   number of particles =       8\n",
      "   group #  9   number of particles =      42\n",
      "   group # 10   number of particles =      98\n",
      "   group # 11   number of particles =     153\n",
      "   group # 12   number of particles =       0\n",
      "   group # 13   number of particles =     113\n",
      "   group # 14   number of particles =      32\n",
      "   group # 15   number of particles =      84\n",
      "   group # 16   number of particles =      92\n",
      "   group # 17   number of particles =      16\n",
      "   group # 18   number of particles =     314\n",
      "   group # 19   number of particles =     371\n",
      "   group # 20   number of particles =       0\n",
      "   group # 21   number of particles =       0\n",
      "   group # 22   number of particles =     134\n",
      "   group # 23   number of particles =       1\n",
      "   group # 24   number of particles =     163\n",
      "   group # 25   number of particles =       0\n",
      "   group # 26   number of particles =     182\n",
      "   group # 27   number of particles =      56\n",
      "   group # 28   number of particles =     335\n",
      "   group # 29   number of particles =     286\n",
      "   group # 30   number of particles =     311\n",
      "   group # 31   number of particles =      18\n",
      "   group # 32   number of particles =      26\n",
      "   group # 33   number of particles =      54\n",
      "   group # 34   number of particles =       2\n",
      "   group # 35   number of particles =      62\n",
      "   group # 36   number of particles =       0\n",
      "   group # 37   number of particles =      51\n",
      "   group # 38   number of particles =      82\n",
      "   group # 39   number of particles =     167\n",
      "   group # 40   number of particles =       1\n",
      "   group # 41   number of particles =     260\n",
      "   group # 42   number of particles =     175\n",
      "   group # 43   number of particles =     306\n",
      "   group # 44   number of particles =     147\n",
      "   group # 45   number of particles =     238\n",
      "   group # 46   number of particles =      22\n",
      "   group # 47   number of particles =       0\n",
      "   group # 48   number of particles =     142\n",
      "   group # 49   number of particles =       0\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "****************************************************************************************************\r\n",
      "                    End of the program mref_ali2d_GPU: Mon, 29 Mar 2021 10:29:22\r\n",
      "****************************************************************************************************\r\n",
      "2021-03-29 10:29:22 :: main() :: Pre-alignment call complete\r\n"
     ]
    }
   ],
   "source": [
    "!mpirun -np 4 test_mref_gpu_align.py rib70s.hdf rib70s_ref50.hdf out_0329 --ou=52 --xr=3 --yr=3 --ts=1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "!sxtransform2d.py rib70s.hdf rib70s_align.hdf"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "5000 images, processing 0-4999 stepping by 1\n",
      "5000 images\n"
     ]
    }
   ],
   "source": [
    "!e2proc2d.py rib70s_align.hdf rib70s_align.mrcs"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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