-
Notifications
You must be signed in to change notification settings - Fork 17
334 lines (299 loc) · 15.1 KB
/
cmake-ninja.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
name: cmake-ninja
on:
push:
#pull_request:
release:
types: published
jobs:
build:
# The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac.
# You can convert this to a matrix build if you need cross-platform coverage.
# See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix
runs-on: ubuntu-latest
# Use centos7
container:
image: centos:7
options: --privileged
steps:
- name: Install GIT
shell: bash
run: |
yum -y install https://packages.endpointdev.com/rhel/7/os/x86_64/endpoint-repo.x86_64.rpm
yum -y install git
git --version
- name: Checkout repository including the .git directory
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Dependencies
shell: bash
run: |
git config --global --add safe.directory '*'
git status
curl -L -O https://github.com/Kitware/CMake/releases/download/v3.16.4/cmake-3.16.4-Linux-x86_64.sh
chmod +x cmake-3.16.4-Linux-x86_64.sh
./cmake-3.16.4-Linux-x86_64.sh --skip-license --prefix=/usr/local
curl -L -O https://www.mirrorservice.org/sites/dl.fedoraproject.org/pub/epel/7/x86_64/Packages/p/p7zip-16.02-20.el7.x86_64.rpm
curl -L -O https://www.mirrorservice.org/sites/dl.fedoraproject.org/pub/epel/7/x86_64/Packages/p/p7zip-plugins-16.02-20.el7.x86_64.rpm
rpm -U --quiet p7zip-16.02-20.el7.x86_64.rpm
rpm -U --quiet p7zip-plugins-16.02-20.el7.x86_64.rpm
yum install -y epel-release
yum install -y make libasan gcc-gfortran gcc-c++ unzip openblas-devel lapack-devel zlib-devel tree fuse-sshfs fuse-libs file openmpi-devel wget python3
groupadd fuse
user="$(whoami)"
usermod -a -G fuse "$user"
curl -L -O https://github.com/ninja-build/ninja/releases/download/v1.11.1/ninja-linux.zip
unzip ninja-linux.zip
mv ./ninja /usr/bin
curl -L -O https://github.com/linuxdeploy/linuxdeploy/releases/download/continuous/linuxdeploy-x86_64.AppImage
chmod +x linuxdeploy-x86_64.AppImage
- name: Install GNU GCC 8
shell: bash
run: |
yum install -y centos-release-scl
yum install -y devtoolset-8-gcc*
source /opt/rh/devtoolset-8/enable
scl enable devtoolset-8 bash
which gcc
echo 'source /opt/rh/devtoolset-8/enable' >> ~/.bashrc
echo 'scl enable devtoolset-8 bash' >> ~/.bashrc
#GCC_DIR='/opt/rh/devtoolset-8/root/usr'
GCC_DIR=$(dirname $(dirname $(which gcc)))
echo 'export PATH="'${GCC_DIR}'/bin:$PATH"' >> ~/.bashrc
echo 'export LD_LIBRARY_PATH="'${GCC_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo 'export LD_LIBRARY_PATH="'${GCC_DIR}'/lib64:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo 'export CC="'${GCC_DIR}'/bin/gcc"' >> ~/.bashrc
echo 'export GCC="'${GCC_DIR}'/bin/gcc"' >> ~/.bashrc
echo 'export FC="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc
echo 'export F77="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc
echo 'export F90="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc
echo 'export CXX="'${GCC_DIR}'/bin/g++"' >> ~/.bashrc
echo 'export FC="'${GCC_DIR}'/bin/gfortran"' >> ~/.bashrc
CFLAGS='-march=generic -mtune=generic -O3 -pipe'
echo 'CHOST="x86_64-pc-linux-gnu"' >> ~/.bashrc
echo 'CFLAGS="'${CFLAGS}'"' >> ~/.bashrc
echo 'CXXFLAGS="'${CFLAGS}'"' >> ~/.bashrc
echo "======================================================================="
gcc --version
cat ~/.bashrc
echo "======================================================================="
- name: Install OpenMPI 4.1.0
run: |
source ~/.bashrc
yum install -y rdma-core-devel
wget https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-4.1.0.tar.gz
tar -xvf openmpi-4.1.0.tar.gz
cd openmpi-4.1.0
./configure --enable-static --disable-dlopen --enable-mpi1-compatibility --prefix=/opt/openmpi/4.1.0
#./configure --enable-debug --enable-static --disable-dlopen --enable-mpi1-compatibility --prefix=/opt/openmpi/4.1.0
make -j && make install
echo "======================================================================="
MPI_DIR='/opt/openmpi/4.1.0'
echo 'MPI_DIR="'${MPI_DIR}'"' >> $GITHUB_ENV
echo ${MPI_DIR}
echo 'export MPI_DIR="'${MPI_DIR}'"' >> ~/.bashrc
echo 'export PATH="'${MPI_DIR}'/bin:$PATH"' >> ~/.bashrc
echo 'export LD_LIBRARY_PATH="'${MPI_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo "======================================================================="
cat ~/.bashrc
echo "======================================================================="
- name: Install HDF5 1.12.2
run: |
source ~/.bashrc
wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.2/src/hdf5-1.12.2.tar.gz
tar -xvf hdf5-1.12.2.tar.gz
cd hdf5-1.12.2
./configure --prefix=/opt/hdf5/1.12.2 --with-pic --enable-fortran --enable-parallel CC=$(which mpicc) CXX=$(which mpicxx) FC=$(which mpifort)
#./configure --enable-build-mode=debug --prefix=/opt/hdf5/1.12.2 --with-pic --enable-fortran --enable-parallel CC=$(which mpicc) CXX=$(which mpicxx) FC=$(which mpifort)
make -j && make install
echo "======================================================================="
HDF5_DIR='/opt/hdf5/1.12.2'
echo ${HDF5_DIR}
echo 'HDF5_DIR="'${HDF5_DIR}'"' >> $GITHUB_ENV
echo 'export HDF5_DIR="'${HDF5_DIR}'"' >> ~/.bashrc
echo 'export HDF5_ROOT="'${HDF5_DIR}'"' >> ~/.bashrc
echo 'export PATH="'${HDF5_DIR}'/include:$PATH"' >> ~/.bashrc
echo 'export PATH="'${HDF5_DIR}'/bin:$PATH"' >> ~/.bashrc
echo 'export LD_LIBRARY_PATH="'${HDF5_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo "======================================================================="
cat ~/.bashrc
echo "======================================================================="
- name: Install PETSc 3.18.4
run: |
PETSCVERSION='3.18.4'
source ~/.bashrc
wget --no-check-certificate https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${PETSCVERSION}.tar.gz
tar -xvf petsc-${PETSCVERSION}.tar.gz
cd petsc-${PETSCVERSION}
#--with-cc=$(which mpicc) \
#--with-cxx=$(which mpicxx) \
#--with-fc=$(which mpifort) \
./configure \
PETSC_ARCH=arch-linux \
--prefix=/opt/petsc/${PETSCVERSION} \
--with-mpi-dir=${MPI_DIR} \
--with-debugging=0 \
COPTFLAGS='-O3 -march=native -mtune=native' \
CXXOPTFLAGS='-O3 -march=native -mtune=native' \
FOPTFLAGS='-O3 -march=native -mtune=native' \
--download-hypre \
--download-mumps \
--download-scalapack \
--download-fblaslapack=1
make -j && make install
echo "======================================================================="
PETSC_DIR='/opt/petsc/'${PETSCVERSION}
echo ${PETSC_DIR}
echo 'export PETSC_DIR="'${PETSC_DIR}'"' >> ~/.bashrc
echo 'export PATH="'${PETSC_DIR}'/bin:$PATH"' >> ~/.bashrc
echo 'export LD_LIBRARY_PATH="'${PETSC_DIR}'/lib:$LD_LIBRARY_PATH"' >> ~/.bashrc
echo 'export PETSC_ARCH=' >> ~/.bashrc
echo "======================================================================="
cat ~/.bashrc
echo "======================================================================="
- name: Configure CMake Piclas Single-core
shell: bash
# Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
# See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
run: |
source ~/.bashrc
cmake -G Ninja -B build_single -DPICLAS_INSTRUCTION=-mtune=generic -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=OFF -DLIBS_BUILD_HDF5=OFF -DPICLAS_BUILD_POSTI=ON -DPOSTI_BUILD_SUPERB=ON -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr
- name: Build Piclas Single-core
shell: bash
run: |
source ~/.bashrc
cmake --build build_single
- name: Configure CMake Piclas DSMC
shell: bash
# Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
# See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
run: |
source ~/.bashrc
cmake -G Ninja -B build_DSMC -DPICLAS_INSTRUCTION=-mtune=generic -DPOSTI_BUILD_PICLAS2VTK=OFF -DPOSTI_BUILD_SUPERB=OFF -DPICLAS_POLYNOMIAL_DEGREE=1 -DPICLAS_TIMEDISCMETHOD=DSMC -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=ON -DLIBS_BUILD_HDF5=OFF -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr
- name: Build Piclas DSMC
shell: bash
run: |
source ~/.bashrc
cmake --build build_DSMC
- name: Configure CMake Piclas Poisson Leapfrog
shell: bash
# Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
# See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
run: |
source ~/.bashrc
cmake -G Ninja -B build_poisson_leapfrog -DPICLAS_INSTRUCTION=-mtune=generic -DPOSTI_BUILD_PICLAS2VTK=OFF -DPOSTI_BUILD_SUPERB=OFF -DPICLAS_TIMEDISCMETHOD=Leapfrog -DPICLAS_EQNSYSNAME=poisson -DPICLAS_PETSC=ON -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=ON -DLIBS_BUILD_HDF5=OFF -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr
#cmake -G Ninja -B build_poisson_leapfrog -DPICLAS_INSTRUCTION=-mtune=generic -DPOSTI_BUILD_PICLAS2VTK=OFF -DPOSTI_BUILD_SUPERB=OFF -DPICLAS_TIMEDISCMETHOD=Leapfrog -DPICLAS_EQNSYSNAME=poisson -DPICLAS_PETSC=OFF -DCMAKE_BUILD_TYPE=Release -DLIBS_USE_MPI=ON -DLIBS_BUILD_HDF5=OFF -DPICLAS_READIN_CONSTANTS=ON -DCMAKE_INSTALL_PREFIX=/usr
- name: Build Piclas Poisson Leapfrog
shell: bash
run: |
source ~/.bashrc
cmake --build build_poisson_leapfrog
- name: Create AppImages
shell: bash
run: |
source ~/.bashrc
echo "======================================================================="
ls -la build_single/bin
echo "======================================================================="
cd build_single
# Declare an array of strings
declare -a PROGS=("piclas2vtk" "superB")
# Iterate the string array
for PROG in ${PROGS[@]}; do
rm -rf AppDir
DESTDIR=AppDir ninja install
mkdir -p AppDir/usr/share/icons
cp ../docs/logo.png AppDir/usr/share/icons/${PROG}.png
mkdir -p AppDir/usr/share/icons/hicolor/64x64/apps/
ln -sf ../../../${PROG}.png AppDir/usr/share/icons/hicolor/64x64/apps/
cp ../.github/workflows/piclas.desktop template.desktop
mv template.desktop ${PROG}.desktop
sed -i -e "s/Name=.*/Name=${PROG}/" ${PROG}.desktop
sed -i -e "s/Exec=.*/Exec=${PROG}/" ${PROG}.desktop
sed -i -e "s/Icon=.*/Icon=${PROG}/" ${PROG}.desktop
./../linuxdeploy-x86_64.AppImage --appdir AppDir --output appimage --desktop-file=${PROG}.desktop
done
# Check folder contents
ls -la
cd ..
echo "======================================================================="
ls -la build_DSMC/bin
echo "======================================================================="
cd build_DSMC
# Declare an array of strings
declare -a PROGS=("piclas")
# Iterate the string array
for PROG in ${PROGS[@]}; do
rm -rf AppDir
DESTDIR=AppDir ninja install
mkdir -p AppDir/usr/share/icons
cp ../docs/logo.png AppDir/usr/share/icons/${PROG}.png
mkdir -p AppDir/usr/share/icons/hicolor/64x64/apps/
ln -sf ../../../${PROG}.png AppDir/usr/share/icons/hicolor/64x64/apps/
cp ../.github/workflows/piclas.desktop template.desktop
mv template.desktop ${PROG}.desktop
sed -i -e "s/Name=.*/Name=${PROG}/" ${PROG}.desktop
sed -i -e "s/Exec=.*/Exec=${PROG}/" ${PROG}.desktop
sed -i -e "s/Icon=.*/Icon=${PROG}/" ${PROG}.desktop
./../linuxdeploy-x86_64.AppImage --appdir AppDir --output appimage --desktop-file=${PROG}.desktop
done
# Check folder contents
ls -la
cd ..
echo "======================================================================="
ls -la build_poisson_leapfrog/bin
echo "======================================================================="
cd build_poisson_leapfrog
# Declare an array of strings
declare -a PROGS=("piclas")
# Iterate the string array
for PROG in ${PROGS[@]}; do
rm -rf AppDir
DESTDIR=AppDir ninja install
mkdir -p AppDir/usr/share/icons
cp ../docs/logo.png AppDir/usr/share/icons/${PROG}.png
mkdir -p AppDir/usr/share/icons/hicolor/64x64/apps/
ln -sf ../../../${PROG}.png AppDir/usr/share/icons/hicolor/64x64/apps/
cp ../.github/workflows/piclas.desktop template.desktop
mv template.desktop ${PROG}.desktop
sed -i -e "s/Name=.*/Name=${PROG}/" ${PROG}.desktop
sed -i -e "s/Exec=.*/Exec=${PROG}/" ${PROG}.desktop
sed -i -e "s/Icon=.*/Icon=${PROG}/" ${PROG}.desktop
./../linuxdeploy-x86_64.AppImage --appdir AppDir --output appimage --desktop-file=${PROG}.desktop
done
# Check folder contents
ls -la
cd ..
- name: Create archives
shell: bash
run: |
mkdir artifacts
mkdir release-assets
cp build_single/piclas2vtk*x86_64.AppImage piclas2vtk
cp build_single/superB*x86_64.AppImage superB
cp build_DSMC/piclas-*x86_64.AppImage piclasDSMC
cp build_poisson_leapfrog/piclas-*x86_64.AppImage piclasLeapfrogHDG
md5sum piclasDSMC > md5sum.txt
md5sum piclasLeapfrogHDG >> md5sum.txt
md5sum piclas2vtk >> md5sum.txt
md5sum superB >> md5sum.txt
cat md5sum.txt
7z a release-assets/piclas-linux64.zip piclasDSMC piclasLeapfrogHDG piclas2vtk superB md5sum.txt
ls -la release-assets
mv piclasDSMC piclasLeapfrogHDG piclas2vtk superB md5sum.txt artifacts/.
ls -la artifacts
- name: Upload artifacts
uses: actions/upload-artifact@v3
with:
name: piclas-binaries-v3.1.0
path: artifacts
- name: Upload release asset
if: github.event.action == 'published'
uses: actions/[email protected]
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
upload_url: ${{ github.event.release.upload_url }}
asset_path: ./release-assets/piclas-linux64.zip
asset_name: piclas-linux64.zip
asset_content_type: application/zip