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cell-counter-x

Extended version of the Cell Counter ImageJ plugin, available from http://rsbweb.nih.gov/ij/plugins/cell-counter.html. The cell-counter-x ImageJ plugin maintains all features of the original plugin while adding new features:

  • Which kind of marker is that number? Hovering markers shows the type in a tooltip-like overlay.
  • Custom mapping: changing the mapping of a number to a meaningful literal in an editor let's you keep track of the semantics of each marker

Cell Counter X v1.2

##Build and Install ###Build using Maven

git clone https://github.com/pkainz/cell-counter-x
cd cell-counter-x
mvn clean package

Find the JAR file in target/cell-counter-x-<version>.jar and move it to the plugins folder, or subfolder, restart ImageJ, and there will be a new Cell Counter X command in the Plugins menu or submenu.

##Develop Create an Eclipse project using maven-eclipse-plugin with the following commands:

mvn clean eclipse:clean eclipse:eclipse

Then import the existing project via the Eclipse "Import..." dialog.