Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

numpy pandas error #6

Open
ElChiriquiski opened this issue Mar 29, 2024 · 0 comments
Open

numpy pandas error #6

ElChiriquiski opened this issue Mar 29, 2024 · 0 comments

Comments

@ElChiriquiski
Copy link

Hello I am receiving this error. I made sure to download the ENIGMA data set and pointed the code to it. I ran randomise on some data and registered it to the enigma space

danielsalinas@Precision-3660-27104:~/neurosciencedata/BakerLab/FIT_ICVF-1-2/ENIGMA/stats$ /home/danielsalinas/pnl_randomise/lib/randomise_summary.py
Importing modules
Importing modules complete


  • Summarizing information for files below

/home/danielsalinas/neurosciencedata/BakerLab/FIT_ICVF-1-2/ENIGMA/stats/tbss_FA_tfce_corrp_tstat1.nii.gz

Traceback (most recent call last):
File "/home/danielsalinas/pnl_randomise/lib/randomise_summary.py", line 144, in
corrp_map_classes, df = run_randomise_summary_basics(args)
File "/home/danielsalinas/pnl_randomise/lib/randomise_corrp.py", line 545, in run_randomise_summary_basics
corrp_map_classes = get_corrp_map_classes(corrp_map_locs, args)
File "/home/danielsalinas/pnl_randomise/lib/randomise_corrp.py", line 495, in get_corrp_map_classes
corrpMap = CorrpMap(corrp_map_loc,
File "/home/danielsalinas/pnl_randomise/lib/randomise_corrp.py", line 145, in init
self.get_matrix_info()
File "/home/danielsalinas/pnl_randomise/lib/randomise_con_mat.py", line 147, in get_matrix_info
self.matrix_info.loc['unique values', col] = np.array2string(
File "/usr/local/lib/python3.10/dist-packages/numpy/core/arrayprint.py", line 736, in array2string
return _array2string(a, options, separator, prefix)
File "/usr/local/lib/python3.10/dist-packages/numpy/core/arrayprint.py", line 513, in wrapper
return f(self, *args, **kwargs)
File "/usr/local/lib/python3.10/dist-packages/numpy/core/arrayprint.py", line 546, in _array2string
lst = _formatArray(a, format_function, options['linewidth'],
File "/usr/local/lib/python3.10/dist-packages/numpy/core/arrayprint.py", line 889, in _formatArray
return recurser(index=(),
File "/usr/local/lib/python3.10/dist-packages/numpy/core/arrayprint.py", line 845, in recurser
word = recurser(index + (-i,), next_hanging_indent, next_width)
File "/usr/local/lib/python3.10/dist-packages/numpy/core/arrayprint.py", line 799, in recurser
return format_function(a[index])
File "/home/danielsalinas/.local/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 5423, in getitem
return self._constructor._simple_new(result, name=self._name)
File "/home/danielsalinas/.local/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 659, in _simple_new
assert isinstance(values, cls._data_cls), type(values)
AssertionError: <class 'numpy.float64'>

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant