From 54fa333e80c8b0da076d6231049393ee1943f57b Mon Sep 17 00:00:00 2001 From: kimrutherford Date: Sun, 18 Aug 2024 02:49:25 +0000 Subject: [PATCH] updated to last revision --- results/all_qualifier_changes_file.tsv | 90 ++++++++++++++++++++++++++ 1 file changed, 90 insertions(+) diff --git a/results/all_qualifier_changes_file.tsv b/results/all_qualifier_changes_file.tsv index 2339ecc..b1f3c7a 100644 --- a/results/all_qualifier_changes_file.tsv +++ b/results/all_qualifier_changes_file.tsv @@ -1,4 +1,94 @@ revision user date chromosome systematic_id primary_name feature_type qualifier_type added_or_removed value +9999 vw253 2024-08-16 II SPBC3B8.04c plt1 CDS product added plasma membrane phosphate (Pi) transmembrane transporter Plt1 +9999 vw253 2024-08-16 II SPBC3B8.04c plt1 CDS product removed phosphate (Pi) transmembrane transporter Plt1 +9998 vw253 2024-08-16 II SPBPB2B2.01 nrg1 CDS product added plasma membrane amino acid transmembrane transporter Nrg1 +9998 vw253 2024-08-16 II SPBPB2B2.01 nrg1 CDS product removed plasme amembrane amino acid transmembrane transporter Nrg1 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS controlled_curation added term=species distribution, conserved in eukaryotes only; date=20240816 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS controlled_curation added term=species distribution, conserved in metazoa; date=20240816 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS controlled_curation added term=species distribution, conserved in vertebrates; date=20240816 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS controlled_curation removed term=human HNRNPM and MYEF2 ortholog; date=20240209 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS controlled_curation removed term=species distribution, conserved in eukaryotes only; date=20081110 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS controlled_curation removed term=species distribution, conserved in metazoa; date=20081110 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS controlled_curation removed term=species distribution, conserved in vertebrates; date=20081110 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS product added splicing factor, RNA-binding protein Cip2 +9997 vw253 2024-08-16 I SPAC12G12.03 cip2 CDS product removed RNA-binding protein Cip2 +9997 vw253 2024-08-16 I SPAC222.17 CDS product added conserved fungal protein, probable TBC1 domain (GAP) +9997 vw253 2024-08-16 I SPAC222.17 CDS product removed conserved fungal protein +9997 vw253 2024-08-16 I SPAC328.05 hrb1 CDS product added mRNA splicing surveillance factor, RNA-binding protein Hrb1 +9997 vw253 2024-08-16 I SPAC328.05 hrb1 CDS product removed RNA-binding protein involved in export of mRNAs Hrb1 (predicted) +9997 vw253 2024-08-16 II SPBC16A3.18 cip1 CDS product added splicing factor, RNA-binding protein Cip1 +9997 vw253 2024-08-16 II SPBC16A3.18 cip1 CDS product removed RNA-binding protein Cip1 +9994 vw253 2024-08-15 I SPAC1039.01 CDS controlled_curation added term=orthologous to S. cerevisiae YNR056C; date=19700101 +9994 vw253 2024-08-15 I SPAC1039.01 CDS controlled_curation removed term=orthologous to S. cerevisiae YKL174C and YGL077C and YDL210W; date=19700101 +9994 vw253 2024-08-15 I SPAC1039.01 CDS product added plasma membrane amino acid transmembrane transporter family, related to 7-keto 8-aminopelargonic acid transporter +9994 vw253 2024-08-15 I SPAC1039.01 CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 I SPAC1039.09 isp5 CDS product added plasma membrane amino acid transmembrane transporter Isp5 +9994 vw253 2024-08-15 I SPAC1039.09 isp5 CDS product removed amino acid transmembrane transporter Isp5 +9994 vw253 2024-08-15 I SPAC11D3.08c CDS product added amino acid/polyamine family transmembrane transporter +9994 vw253 2024-08-15 I SPAC11D3.08c CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 I SPAC12G12.03 cip2 CDS controlled_curation added term=human HNRNPM and MYEF2 ortholog; date=20240209 +9994 vw253 2024-08-15 I SPAC12G12.03 cip2 CDS controlled_curation removed term=human HNRNPM ortholog; date=20240209 +9994 vw253 2024-08-15 I SPAC22H10.11c crf1 CDS product added transcriptional coactivator for ribosomal proteins via TOR signaling pathway Crf1/Ifh1 +9994 vw253 2024-08-15 I SPAC22H10.11c crf1 CDS product removed transcriptional coactivator for ribosomal proteins via TOR signaling pathway Crf1Ifh1 +9994 vw253 2024-08-15 I SPAC23E2.02 lsd2 CDS controlled_curation added term=human KDM1A and KDM1B ortholog; date=19700101 +9994 vw253 2024-08-15 I SPAC23E2.02 lsd2 CDS controlled_curation removed term=human KDM1B ortholog; date=19700101 +9994 vw253 2024-08-15 I SPAC688.14 set13 CDS controlled_curation added term=orthologous to S. cerevisiae YBR030W and YDR257C; date=19700101 +9994 vw253 2024-08-15 I SPAC688.14 set13 CDS controlled_curation removed term=orthologous to S. cerevisiae YDR257C; date=19700101 +9994 vw253 2024-08-15 I SPAC6F6.04c CDS product added MFS superfamily, UNC-93 subfamily, transmembrane transporter +9994 vw253 2024-08-15 I SPAC6F6.04c CDS product removed transmembrane transporter (predicted) +9994 vw253 2024-08-15 I SPAC922.05c CDS controlled_curation added term=human MFSD11 ortholog; date=20220609 +9994 vw253 2024-08-15 I SPAC922.05c CDS controlled_curation removed term=human UNC93A and MFSD11 ortholog; date=20220609 +9994 vw253 2024-08-15 I SPAC922.05c CDS product added MFS superfamily, UNC-93 subfamily, transmembrane transporter +9994 vw253 2024-08-15 I SPAC922.05c CDS product removed transmembrane transporter (predicted) +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS controlled_curation added term=human INPP5J and OCRL ortholog; date=20240815 +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS controlled_curation added term=orthologous to S. cerevisiae YNL106C and YOR109W; date=20220518 +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS controlled_curation removed term=human INPP5J ortholog; date=20110707 +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS controlled_curation removed term=human OCRL ortholog; date=20220518 +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS controlled_curation removed term=orthologous to S. cerevisiae YNL106C; date=20220518 +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS controlled_curation removed term=orthologous to S. cerevisiae YOR109W; date=19700101 +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS product added inositol polyphosphate phosphatase Inp53 +9994 vw253 2024-08-15 I SPAC9G1.10c inp53 CDS product removed inositol polyphosphate phosphatase Inp53 (predicted) +9994 vw253 2024-08-15 I SPAPB24D3.02c CDS product added amino acid/polyamine family transmembrane transporter +9994 vw253 2024-08-15 I SPAPB24D3.02c CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 II SPBC1347.02 ani1 CDS controlled_curation added term=human NPM1 and NPM2 and NPM3 ortholog; date=20240209 +9994 vw253 2024-08-15 II SPBC1347.02 ani1 CDS controlled_curation removed term=human FKBP1B ortholog; date=20240209 +9994 vw253 2024-08-15 II SPBC15C4.04c CDS product added amino acid/polyamine family transmembrane transporter +9994 vw253 2024-08-15 II SPBC15C4.04c CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 II SPBC1652.02 CDS product added plasma membrane amino acid transmembrane transporter +9994 vw253 2024-08-15 II SPBC1652.02 CDS product removed APC amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 II SPBC19F8.06c meu22 CDS product added plasma membrane amino acid transmembrane transporter Meu22 +9994 vw253 2024-08-15 II SPBC19F8.06c meu22 CDS product removed amino acid transmembrane transporter Meu22 (predicted) +9994 vw253 2024-08-15 II SPBC337.11 CDS controlled_curation added term=orthologous to S. cerevisiae YBL069W and YER101C; date=19700101 +9994 vw253 2024-08-15 II SPBC337.11 CDS controlled_curation removed term=orthologous to S. cerevisiae YCR102C and YLR460C and YNL134C and YBL069W and YER101C; date=19700101 +9994 vw253 2024-08-15 II SPBC337.11 CDS product added CH-OH group oxidoreductase +9994 vw253 2024-08-15 II SPBC337.11 CDS product removed mitochondrial membrane CH-OH group oxidoreductase, implicated in mitochondrial organization or membrane tethering +9994 vw253 2024-08-15 II SPBC359.01 CDS product added plasma membrane amino acid transmembrane transporter +9994 vw253 2024-08-15 II SPBC359.01 CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 II SPBC839.17c fkh1 CDS controlled_curation added term=human FKBP1A and FKBP1B and FKBP1C ortholog; db_xref=PMID:11335722; date=20200123 +9994 vw253 2024-08-15 II SPBC839.17c fkh1 CDS controlled_curation removed term=human FKBP1A and FKBP1B ortholog; db_xref=PMID:11335722; date=20200123 +9994 vw253 2024-08-15 II SPBPB2B2.01 nrg1 CDS product added plasme amembrane amino acid transmembrane transporter Nrg1 +9994 vw253 2024-08-15 II SPBPB2B2.01 nrg1 CDS product removed amino acid transmembrane transporter Nrg1 +9994 vw253 2024-08-15 III SPCC297.03 ssp1 CDS controlled_curation added term=human CAMKK1 ortholog; date=20100908 +9994 vw253 2024-08-15 III SPCC297.03 ssp1 CDS controlled_curation added term=species distribution, predominantly single copy (one to one); date=20240815 +9994 vw253 2024-08-15 III SPCC297.03 ssp1 CDS controlled_curation removed term=human CAMKK1 and CAMKK2 ortholog; date=20100908 +9994 vw253 2024-08-15 III SPCC417.08 tef3 CDS controlled_curation added term=misc, metazoa do not have tef3 due to differenees in the translation machinery; date=20240815 +9994 vw253 2024-08-15 III SPCC417.08 tef3 CDS controlled_curation added term=species distribution, conserved in fungi only; date=20240815 +9994 vw253 2024-08-15 III SPCC417.08 tef3 CDS controlled_curation removed term=species distribution, conserved in eukaryotes only; date=20220921 +9994 vw253 2024-08-15 III SPCC417.08 tef3 CDS controlled_curation removed term=species distribution, conserved in metazoa; date=20220921 +9994 vw253 2024-08-15 III SPCC417.08 tef3 CDS controlled_curation removed term=species distribution, conserved in vertebrates; date=20220921 +9994 vw253 2024-08-15 III SPCC584.13 CDS product added amino acid/polyamine family transmembrane transporter +9994 vw253 2024-08-15 III SPCC584.13 CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 III SPCC74.04 CDS product added amino acid/polyamine family transmembrane transporter +9994 vw253 2024-08-15 III SPCC74.04 CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 III SPCC777.04 dip5 CDS product added plasma membrane amino acid transmembrane transporter Dip5 +9994 vw253 2024-08-15 III SPCC777.04 dip5 CDS product removed amino acid transmembrane transporter Dip5 (predicted) +9994 vw253 2024-08-15 III SPCC794.03 CDS product added amino acid/polyamine family transmembrane transporter +9994 vw253 2024-08-15 III SPCC794.03 CDS product removed amino acid transmembrane transporter (predicted) +9994 vw253 2024-08-15 III SPCPB1C11.02 CDS product added plasma membrane amino acid transmembrane transporter +9994 vw253 2024-08-15 III SPCPB1C11.02 CDS product removed amino acid transmembrane transporter (predicted) +9992 vw253 2024-08-14 I SPAC212.01c CDS controlled_curation added term=misc, repeat expansion SQRSQRS; date=20240813 +9992 vw253 2024-08-14 I SPAC212.01c CDS note removed repeat expansion SQRSQRS +9992 vw253 2024-08-14 I SPAC513.02 CDS controlled_curation removed term=species distribution, no apparent S. cerevisiae ortholog; date=19700101 9985 vw253 2024-08-13 I SPAC1002.13c psu1 CDS controlled_curation added term=misc, repeat containing; date=19700101 9985 vw253 2024-08-13 I SPAC1002.13c psu1 CDS controlled_curation removed term=sequence feature, repeat containing; cv=sequence_feature; date=19700101 9985 vw253 2024-08-13 I SPAC1002.13c psu1 CDS product added cell wall beta-glucosidase Psu1