Configuration

The configuration file

Most configuration is in the main configuration file.

Adding a new external reference

At the moment there are two potential files to edit to add a new external reference, the config file and update_generated_files.sh.

Edit the "external_gene_references" section in the main config file and add a new configuration. If the database has an entry in the GO.xrf_abbs file, add a "go_xrf_abbrev" field to the new configuration that matches the "abbreviation" in GO.xrf_abbs. Then add the ID of the external DB to update_generated_files.sh.

If there isn't a GO.xrf_abbs entry add a url field to the new configuration.

See the config file page for more detail.

update_generated_files.sh

Location: https://github.com/pombase/website/blob/master/frontend/etc/update_generated_files.sh

The "abbreviation" from the GO.xrf_abbs needs to be added to this line:

ABBREVS="AGI_LocusCode CDD DDJB EC ECOGENE EMBL ...