From 507d4b5457b48673be5c843243ac9ce6efe20521 Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Fri, 9 Dec 2022 16:31:54 +0000
Subject: [PATCH 1/4] Update location of plugins directory under macOS.

With the new macOS launcher, the layout of the macOS package has
changed, and plugins are now expected to be in the plugins directory
immediately under the Contents directory of the bundle, instead of being
under Java/plugins.
---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 14cbbe4..7cfbf90 100644
--- a/pom.xml
+++ b/pom.xml
@@ -228,7 +228,7 @@
                             <goal>copy-dependencies</goal>
                         </goals>
                         <configuration>
-                            <outputDirectory>${project.build.directory}/${os-x.directory}/${protege.directory}/Protégé.app/Contents/Java/plugins
+                            <outputDirectory>${project.build.directory}/${os-x.directory}/${protege.directory}/Protégé.app/Contents/plugins
                             </outputDirectory>
                             <overWriteReleases>false</overWriteReleases>
                             <overWriteSnapshots>true</overWriteSnapshots>

From e749d83ca9db8ff814a08d8336dff001db6d5260 Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Fri, 9 Dec 2022 16:42:03 +0000
Subject: [PATCH 2/4] Bump version number.

---
 pom.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pom.xml b/pom.xml
index 7cfbf90..0653d70 100644
--- a/pom.xml
+++ b/pom.xml
@@ -7,14 +7,14 @@
     <groupId>edu.stanford.protege</groupId>
     <artifactId>protege-distribution</artifactId>
     <packaging>pom</packaging>
-    <version>5.6.0</version>
+    <version>5.6.0-beta-1-SNAPSHOT</version>
 
     <properties>
         <!--
         The version of Protege that we are targeting.  We set this to our project version.  The two should be in sync.
         Note that we declare the oss-sonatype snapshot repository so that we can work with snapshots.
         -->
-        <protege.version>5.6.0</protege.version>
+        <protege.version>5.6.0-beta-1-SNAPSHOT</protege.version>
 
         <!--
         The directory name for a distribution.  This is the directory that a user copies to the location

From dea142ac7651254378e78bca73a3d338681c9b18 Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Fri, 6 Jan 2023 19:36:45 +0000
Subject: [PATCH 3/4] Include ELK in the distribution.

Bundle the ELK plugon (0.5.0 build from csiro.au) along with its puli
dependency.
---
 pom.xml | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/pom.xml b/pom.xml
index 0653d70..6f5189f 100644
--- a/pom.xml
+++ b/pom.xml
@@ -185,6 +185,18 @@
             <version>2.0.10</version>
         </dependency>
 
+        <dependency>
+            <groupId>au.csiro</groupId>
+            <artifactId>elk-protege</artifactId>
+            <version>0.5.0</version>
+        </dependency>
+
+        <dependency>
+            <groupId>org.liveontologies</groupId>
+            <artifactId>puli</artifactId>
+            <version>0.1.0</version>
+        </dependency>
+
     </dependencies>
 
 

From 991295f813040aa5630bdd4ef944b6dd2b21756c Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Fri, 6 Jan 2023 19:37:54 +0000
Subject: [PATCH 4/4] Bump version number to 5.6.0-beta-2-SNAPSHOT.

---
 pom.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pom.xml b/pom.xml
index 6f5189f..ff31aae 100644
--- a/pom.xml
+++ b/pom.xml
@@ -7,14 +7,14 @@
     <groupId>edu.stanford.protege</groupId>
     <artifactId>protege-distribution</artifactId>
     <packaging>pom</packaging>
-    <version>5.6.0-beta-1-SNAPSHOT</version>
+    <version>5.6.0-beta-2-SNAPSHOT</version>
 
     <properties>
         <!--
         The version of Protege that we are targeting.  We set this to our project version.  The two should be in sync.
         Note that we declare the oss-sonatype snapshot repository so that we can work with snapshots.
         -->
-        <protege.version>5.6.0-beta-1-SNAPSHOT</protege.version>
+        <protege.version>5.6.0-beta-2-SNAPSHOT</protege.version>
 
         <!--
         The directory name for a distribution.  This is the directory that a user copies to the location