From 100860a8a4b19e34018aaaa00459832fadfc7119 Mon Sep 17 00:00:00 2001
From: silag <silaghialexmihail@gmail.com>
Date: Thu, 27 Jun 2024 10:52:01 +0300
Subject: [PATCH] added owl annotation value deserializer

---
 pom.xml                                       |  2 +-
 .../webprotege/jackson/IriDeserializer.java   | 26 ++++++++++++
 .../OWLAnnotationValueDeserializer.java       | 42 +++++++++++++++++++
 .../jackson/WebProtegeJacksonApplication.java |  2 +
 4 files changed, 71 insertions(+), 1 deletion(-)
 create mode 100644 src/main/java/edu/stanford/protege/webprotege/jackson/IriDeserializer.java
 create mode 100644 src/main/java/edu/stanford/protege/webprotege/jackson/OWLAnnotationValueDeserializer.java

diff --git a/pom.xml b/pom.xml
index 01188db..94dca69 100644
--- a/pom.xml
+++ b/pom.xml
@@ -10,7 +10,7 @@
 	</parent>
 	<groupId>edu.stanford.protege</groupId>
 	<artifactId>webprotege-jackson</artifactId>
-	<version>0.9.2</version>
+	<version>0.9.3</version>
 	<name>webprotege-jackson</name>
 	<description>Jackson Serializers and Deserializers for OWL API Objects</description>
 	<properties>
diff --git a/src/main/java/edu/stanford/protege/webprotege/jackson/IriDeserializer.java b/src/main/java/edu/stanford/protege/webprotege/jackson/IriDeserializer.java
new file mode 100644
index 0000000..64047ca
--- /dev/null
+++ b/src/main/java/edu/stanford/protege/webprotege/jackson/IriDeserializer.java
@@ -0,0 +1,26 @@
+package edu.stanford.protege.webprotege.jackson;
+
+import com.fasterxml.jackson.core.JsonParser;
+import com.fasterxml.jackson.databind.DeserializationContext;
+import com.fasterxml.jackson.databind.deser.std.StdDeserializer;
+import org.semanticweb.owlapi.model.IRI;
+
+import java.io.IOException;
+
+/**
+ * Matthew Horridge
+ * Stanford Center for Biomedical Informatics Research
+ * 18 Jun 2018
+ */
+public class IriDeserializer extends StdDeserializer<IRI> {
+
+    public IriDeserializer() {
+        super(IRI.class);
+    }
+
+    @Override
+    public IRI deserialize(JsonParser jsonParser, DeserializationContext deserializationContext) throws IOException {
+        return IRI.create(jsonParser.getValueAsString());
+    }
+}
+
diff --git a/src/main/java/edu/stanford/protege/webprotege/jackson/OWLAnnotationValueDeserializer.java b/src/main/java/edu/stanford/protege/webprotege/jackson/OWLAnnotationValueDeserializer.java
new file mode 100644
index 0000000..64ca7ed
--- /dev/null
+++ b/src/main/java/edu/stanford/protege/webprotege/jackson/OWLAnnotationValueDeserializer.java
@@ -0,0 +1,42 @@
+package edu.stanford.protege.webprotege.jackson;
+
+import com.fasterxml.jackson.core.JsonParser;
+import com.fasterxml.jackson.core.JsonToken;
+import com.fasterxml.jackson.databind.DeserializationContext;
+import com.fasterxml.jackson.databind.JsonDeserializer;
+import com.fasterxml.jackson.databind.deser.std.StdDeserializer;
+import edu.stanford.protege.webprotege.jackson.OWLLiteralDeserializer;
+import org.semanticweb.owlapi.model.OWLAnnotationValue;
+
+import javax.annotation.Nonnull;
+import javax.inject.Inject;
+import java.io.IOException;
+
+import static com.google.common.base.Preconditions.checkNotNull;
+
+public class OWLAnnotationValueDeserializer extends StdDeserializer<OWLAnnotationValue> {
+
+    @Nonnull
+    private final OWLLiteralDeserializer literalDeserializer;
+
+    @Nonnull
+    private final IriDeserializer iriDeserializer;
+
+    @Inject
+    public OWLAnnotationValueDeserializer(@Nonnull OWLLiteralDeserializer literalDeserializer, @Nonnull IriDeserializer iriDeserializer) {
+        super(OWLAnnotationValue.class);
+        this.literalDeserializer = checkNotNull(literalDeserializer);
+        this.iriDeserializer = checkNotNull(iriDeserializer);
+    }
+
+    @Override
+    public OWLAnnotationValue deserialize(JsonParser p, DeserializationContext ctxt) throws IOException {
+        if(p.hasToken(JsonToken.START_OBJECT)) {
+            return literalDeserializer.deserialize(p, ctxt);
+        }
+        else {
+            return iriDeserializer.deserialize(p, ctxt);
+        }
+    }
+}
+
diff --git a/src/main/java/edu/stanford/protege/webprotege/jackson/WebProtegeJacksonApplication.java b/src/main/java/edu/stanford/protege/webprotege/jackson/WebProtegeJacksonApplication.java
index 0853620..4f390d7 100644
--- a/src/main/java/edu/stanford/protege/webprotege/jackson/WebProtegeJacksonApplication.java
+++ b/src/main/java/edu/stanford/protege/webprotege/jackson/WebProtegeJacksonApplication.java
@@ -202,6 +202,8 @@ public ObjectMapper objectMapper(OWLDataFactory dataFactory) {
 		module.setMixInAnnotation(OWLAnnotationProperty.class, OWLAnnotationPropertyMixin.class);
 		module.addDeserializer(OWLAnnotationPropertyImpl.class, new OWLEntityDeserializer<>(dataFactory, EntityType.ANNOTATION_PROPERTY));
 
+		module.addDeserializer(OWLAnnotationValue.class, new OWLAnnotationValueDeserializer(new OWLLiteralDeserializer(dataFactory), new IriDeserializer()));
+
 		module.setMixInAnnotation(OWLIndividual.class, OWLIndividualMixin.class);
 
 		module.setMixInAnnotation(OWLNamedIndividual.class, OWLNamedIndividualMixin.class);