From 1276a384292159f1d98ad8e77777602213bdecf9 Mon Sep 17 00:00:00 2001 From: Circle Ci Date: Mon, 7 Oct 2024 06:11:53 +0000 Subject: [PATCH] doc updates [skip ci] --- .../auto_examples_python.zip | Bin 28722 -> 28722 bytes .../intro_causal_graphs.zip | Bin 22097 -> 22097 bytes .../inducing_path.zip | Bin 10236 -> 10236 bytes .../plot_timeseries_graphs.zip | Bin 5390 -> 5390 bytes .../plot_mixed_edge_graph.zip | Bin 13774 -> 13774 bytes .../checking_validity_of_a_pag.zip | Bin 9337 -> 9337 bytes .../auto_examples_jupyter.zip | Bin 38586 -> 38586 bytes ...aw_and_compare_graphs_with_same_layout.zip | Bin 6338 -> 6338 bytes .../sphx_glr_plot_mixed_edge_graph_001.png | Bin 12696 -> 16248 bytes .../sphx_glr_plot_mixed_edge_graph_thumb.png | Bin 9832 -> 10906 bytes .../intro/checking_validity_of_a_pag.rst.txt | 6 ++-- .../auto_examples/intro/inducing_path.rst.txt | 2 +- .../intro/intro_causal_graphs.rst.txt | 8 +++--- .../intro/sg_execution_times.rst.txt | 14 +++++----- .../mixededge/plot_mixed_edge_graph.rst.txt | 4 +-- .../mixededge/sg_execution_times.rst.txt | 6 ++-- ...nd_compare_graphs_with_same_layout.rst.txt | 2 +- .../plot_timeseries_graphs.rst.txt | 2 +- .../visualization/sg_execution_times.rst.txt | 10 +++---- dev/_sources/sg_execution_times.rst.txt | 26 +++++++++--------- .../intro/checking_validity_of_a_pag.html | 6 ++-- dev/auto_examples/intro/inducing_path.html | 2 +- .../intro/intro_causal_graphs.html | 8 +++--- .../intro/sg_execution_times.html | 14 +++++----- .../mixededge/plot_mixed_edge_graph.html | 4 +-- .../mixededge/sg_execution_times.html | 6 ++-- ...w_and_compare_graphs_with_same_layout.html | 2 +- .../visualization/plot_timeseries_graphs.html | 2 +- .../visualization/sg_execution_times.html | 10 +++---- dev/generated/pywhy_graphs.ADMG.html | 10 +++---- .../pywhy_graphs.AugmentedGraph.html | 4 +-- dev/generated/pywhy_graphs.CPDAG.html | 8 +++--- dev/generated/pywhy_graphs.PAG.html | 8 +++--- ...hs.algorithms.all_semi_directed_paths.html | 2 +- ...aphs.algorithms.is_semi_directed_path.html | 2 +- .../pywhy_graphs.algorithms.label_edges.html | 2 +- .../pywhy_graphs.algorithms.order_edges.html | 2 +- ...irected_paths.all_semi_directed_paths.html | 2 +- ..._directed_paths.is_semi_directed_path.html | 2 +- ....timeseries.StationaryTimeSeriesCPDAG.html | 8 +++--- ...es.timeseries.StationaryTimeSeriesPAG.html | 8 +++--- ....classes.timeseries.get_summary_graph.html | 2 +- ....functional.discrete.add_cpd_for_node.html | 2 +- ...l.discrete.make_random_discrete_graph.html | 2 +- ...functional.make_graph_linear_gaussian.html | 2 +- ...phs.functional.make_graph_multidomain.html | 2 +- .../pywhy_graphs.networkx.MixedEdgeGraph.html | 14 +++++----- .../pywhy_graphs.networkx.m_separated.html | 2 +- dev/index.html | 2 +- dev/reference/classes/index.html | 20 +++++++------- dev/searchindex.js | 2 +- dev/sg_execution_times.html | 26 +++++++++--------- 52 files changed, 134 insertions(+), 134 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obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'L', 'I', 'S', 'PSH', 'G'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,7 +195,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.188 seconds) + **Total running time of the script:** (0 minutes 1.298 seconds) **Estimated memory usage:** 167 MB diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 4f522513..f537c9fd 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,7 +241,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.152 seconds) + **Total running time of the script:** (0 minutes 1.202 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index 31d75e4b..fb152db2 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -427,9 +427,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.325 seconds) + **Total running time of the script:** (0 minutes 2.636 seconds) -**Estimated memory usage:** 252 MB +**Estimated memory usage:** 251 MB .. _sphx_glr_download_auto_examples_intro_intro_causal_graphs.py: diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index d6a88e62..6545fa1a 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:04.664** total execution time for 3 files **from auto_examples/intro**: +**00:05.135** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.325 - - 252.1 + - 00:02.636 + - 251.3 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.188 - - 167.0 + - 00:01.298 + - 166.7 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.152 - - 165.4 + - 00:01.202 + - 165.1 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 1d96c1ff..1d8d98ff 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -312,7 +312,7 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.336 seconds) + **Total running time of the script:** (0 minutes 1.564 seconds) **Estimated memory usage:** 172 MB diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index df130a2c..9eeba096 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.336** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.564** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.336 - - 171.9 + - 00:01.564 + - 171.5 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index 3e2e4fa2..4322281f 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.427 seconds) + **Total running time of the script:** (0 minutes 0.464 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index ae112af8..f2a56f04 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.077 seconds) + **Total running time of the script:** (0 minutes 1.114 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index 549eed32..215ecade 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.504** total execution time for 2 files **from auto_examples/visualization**: +**00:01.577** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.077 - - 165.4 + - 00:01.114 + - 165.1 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.427 - - 165.4 + - 00:00.464 + - 165.1 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index a1a3b237..1998db6e 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:07.504** total execution time for 6 files **from all galleries**: +**00:08.276** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.325 - - 252.1 + - 00:02.636 + - 251.3 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.336 - - 171.9 + - 00:01.564 + - 171.5 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.188 - - 167.0 + - 00:01.298 + - 166.7 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.152 - - 165.4 + - 00:01.202 + - 165.1 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.077 - - 165.4 + - 00:01.114 + - 165.1 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.427 - - 165.4 + - 00:00.464 + - 165.1 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index eb137196..6d0cbb80 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -566,7 +566,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'L', 'I', 'S', 'PSH', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7efd5e35c710>, included_edges=<networkx.classes.graph.Graph object at 0x7efd5e35ce10>, excluded_edges=<networkx.classes.graph.Graph object at 0x7efd5e35d250>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f701227cc10>, included_edges=<networkx.classes.graph.Graph object at 0x7f701227d310>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f701227d750>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -585,7 +585,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'L', 'I', 'S', 'PSH', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7efd5e3696d0>, included_edges=<networkx.classes.graph.Graph object at 0x7efd5e369dd0>, excluded_edges=<networkx.classes.graph.Graph object at 0x7efd5e36a210>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f7012289590>, included_edges=<networkx.classes.graph.Graph object at 0x7f7012289c90>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f701228a0d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -601,7 +601,7 @@

ReferencesTotal running time of the script: (0 minutes 1.188 seconds)

+

Total running time of the script: (0 minutes 1.298 seconds)

Estimated memory usage: 167 MB