From 16d0ac9f5458b0db55c6dda457912ad54d05e8cf Mon Sep 17 00:00:00 2001 From: Circle Ci Date: Sun, 19 Jan 2025 06:12:25 +0000 Subject: [PATCH] doc updates [skip ci] --- .../auto_examples_python.zip | Bin 28722 -> 28722 bytes .../intro_causal_graphs.zip | Bin 22097 -> 22097 bytes .../inducing_path.zip | Bin 10236 -> 10236 bytes .../plot_timeseries_graphs.zip | Bin 5390 -> 5390 bytes .../plot_mixed_edge_graph.zip | Bin 13774 -> 13774 bytes .../checking_validity_of_a_pag.zip | Bin 9337 -> 9337 bytes .../auto_examples_jupyter.zip | Bin 38586 -> 38586 bytes ...aw_and_compare_graphs_with_same_layout.zip | Bin 6338 -> 6338 bytes .../sphx_glr_plot_mixed_edge_graph_001.png | Bin 14477 -> 16432 bytes .../sphx_glr_plot_mixed_edge_graph_thumb.png | Bin 10728 -> 11450 bytes .../intro/checking_validity_of_a_pag.rst.txt | 6 ++-- .../auto_examples/intro/inducing_path.rst.txt | 2 +- .../intro/intro_causal_graphs.rst.txt | 10 +++--- .../intro/sg_execution_times.rst.txt | 16 ++++----- 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the constructed PAG is a valid one in pywhy-graphs, we can simply do .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'I', 'L', 'G', 'S', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'I', 'L', 'G', 'S', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,7 +195,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.118 seconds) + **Total running time of the script:** (0 minutes 1.161 seconds) **Estimated memory usage:** 166 MB diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 03b31c5b..3f90ede5 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,7 +241,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.071 seconds) + **Total running time of the script:** (0 minutes 1.230 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index 5d19de54..e0493c65 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -307,7 +307,7 @@ in the graph. These unobserved confounders are graphically depicted with a bidir .. code-block:: none - ['x', 'z'] + ['z', 'x'] The ADMG has confounded-components: [{'x', 'y'}, {'z'}, {'w'}] 'z' is d-separated from 'x': True 'z' is d-separated from 'x' given 'y': False @@ -427,9 +427,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.233 seconds) + **Total running time of the script:** (0 minutes 2.561 seconds) -**Estimated memory usage:** 251 MB +**Estimated memory usage:** 248 MB .. _sphx_glr_download_auto_examples_intro_intro_causal_graphs.py: diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 5e54fc38..649c9c11 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:04.422** total execution time for 3 files **from auto_examples/intro**: +**00:04.951** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.233 - - 251.1 - * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.118 - - 166.5 + - 00:02.561 + - 248.3 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.071 - - 165.1 + - 00:01.230 + - 164.7 + * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) + - 00:01.161 + - 166.4 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 31a3fe46..95676b14 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -312,7 +312,7 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.247 seconds) + **Total running time of the script:** (0 minutes 1.416 seconds) **Estimated memory usage:** 171 MB diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index 9af51bc5..13c2ab66 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.247** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.416** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.247 - - 171.0 + - 00:01.416 + - 171.2 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index ec97c57d..c75dd172 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.434 seconds) + **Total running time of the script:** (0 minutes 0.425 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index 93d7625a..61fe09fb 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.078 seconds) + **Total running time of the script:** (0 minutes 1.093 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index b15b9566..1f25b98c 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.512** total execution time for 2 files **from auto_examples/visualization**: +**00:01.518** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.078 - - 165.1 + - 00:01.093 + - 164.7 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.434 - - 165.1 + - 00:00.425 + - 164.7 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index 35378103..32e8ee31 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:07.181** total execution time for 6 files **from all galleries**: +**00:07.885** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.233 - - 251.1 + - 00:02.561 + - 248.3 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.247 - - 171.0 + - 00:01.416 + - 171.2 + * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) + - 00:01.230 + - 164.7 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.118 - - 166.5 + - 00:01.161 + - 166.4 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.078 - - 165.1 - * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.071 - - 165.1 + - 00:01.093 + - 164.7 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.434 - - 165.1 + - 00:00.425 + - 164.7 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index dbc8c155..344715a4 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -539,7 +539,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7069418f2190>, included_edges=<networkx.classes.graph.Graph object at 0x7069418f2890>, excluded_edges=<networkx.classes.graph.Graph object at 0x7069418f2cd0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'I', 'L', 'G', 'S', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7aef4e0d6350>, included_edges=<networkx.classes.graph.Graph object at 0x7aef4e0d6a50>, excluded_edges=<networkx.classes.graph.Graph object at 0x7aef4e0d6e90>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -558,7 +558,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x70694190e150>, included_edges=<networkx.classes.graph.Graph object at 0x70694190e850>, excluded_edges=<networkx.classes.graph.Graph object at 0x70694190ec90>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'I', 'L', 'G', 'S', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7aef4e0ea650>, included_edges=<networkx.classes.graph.Graph object at 0x7aef4e0ead50>, excluded_edges=<networkx.classes.graph.Graph object at 0x7aef4e0eb190>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -574,7 +574,7 @@

ReferencesTotal running time of the script: (0 minutes 1.118 seconds)

+

Total running time of the script: (0 minutes 1.161 seconds)

Estimated memory usage: 166 MB