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As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'L', 'PSH', 'S', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'I', 'G', 'S', 'PSH', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,9 +195,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.188 seconds) + **Total running time of the script:** (0 minutes 1.041 seconds) -**Estimated memory usage:** 166 MB +**Estimated memory usage:** 167 MB .. _sphx_glr_download_auto_examples_intro_checking_validity_of_a_pag.py: diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 2a87a3165..2d2ac673c 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,9 +241,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.277 seconds) + **Total running time of the script:** (0 minutes 1.067 seconds) -**Estimated memory usage:** 165 MB +**Estimated memory usage:** 166 MB .. _sphx_glr_download_auto_examples_intro_inducing_path.py: diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index 5ac9d0c58..8189056c0 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -427,9 +427,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.632 seconds) + **Total running time of the script:** (0 minutes 2.233 seconds) -**Estimated memory usage:** 251 MB +**Estimated memory usage:** 252 MB .. _sphx_glr_download_auto_examples_intro_intro_causal_graphs.py: diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 1e5148efc..d3c404d7e 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:05.096** total execution time for 3 files **from auto_examples/intro**: +**00:04.341** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.632 - - 251.3 + - 00:02.233 + - 252.1 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.277 - - 164.6 + - 00:01.067 + - 165.5 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.188 - - 166.1 + - 00:01.041 + - 167.0 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 1852c26a7..9b8f79ac1 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Z', 'Y', 'X'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['X', 'Z', 'Y'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,9 +312,9 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.493 seconds) + **Total running time of the script:** (0 minutes 1.211 seconds) -**Estimated memory usage:** 171 MB +**Estimated memory usage:** 172 MB .. _sphx_glr_download_auto_examples_mixededge_plot_mixed_edge_graph.py: diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index cc52d6bff..b5c1adbe1 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.493** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.211** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.493 - - 171.0 + - 00:01.211 + - 171.8 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index c75dd172e..f96bdce51 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.425 seconds) + **Total running time of the script:** (0 minutes 0.407 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index 078d242bc..f8a2fdd35 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.157 seconds) + **Total running time of the script:** (0 minutes 1.023 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index f0f8e96b2..bc83380af 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.581** total execution time for 2 files **from auto_examples/visualization**: +**00:01.430** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.157 - - 164.5 + - 00:01.023 + - 165.5 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.425 - - 164.5 + - 00:00.407 + - 165.5 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index abf3fe318..f150a1529 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:08.171** total execution time for 6 files **from all galleries**: +**00:06.982** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.632 - - 251.3 + - 00:02.233 + - 252.1 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.493 - - 171.0 + - 00:01.211 + - 171.8 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.277 - - 164.6 + - 00:01.067 + - 165.5 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.188 - - 166.1 + - 00:01.041 + - 167.0 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.157 - - 164.5 + - 00:01.023 + - 165.5 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.425 - - 164.5 + - 00:00.407 + - 165.5 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index 39543c930..1bceaab94 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -566,7 +566,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'L', 'PSH', 'S', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fa9dc927950>, included_edges=<networkx.classes.graph.Graph object at 0x7fa9dc92c090>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fa9dc92c4d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'I', 'G', 'S', 'PSH', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f51842ba550>, included_edges=<networkx.classes.graph.Graph object at 0x7f51842bac50>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f51842bb090>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -585,7 +585,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'L', 'PSH', 'S', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fa9dc930690>, included_edges=<networkx.classes.graph.Graph object at 0x7fa9dc930d90>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fa9dc9311d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'I', 'G', 'S', 'PSH', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f51842c6f90>, included_edges=<networkx.classes.graph.Graph object at 0x7f51842c7690>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f51842c7ad0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -601,8 +601,8 @@

ReferencesTotal running time of the script: (0 minutes 1.188 seconds)

-

Estimated memory usage: 166 MB

+

Total running time of the script: (0 minutes 1.041 seconds)

+

Estimated memory usage: 167 MB