diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index d0e18bc0..3dd0b7b7 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip index 00dc7ae6..8f78c8eb 100644 Binary files a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip and b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip differ diff --git a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip index 5eec3f46..ba2ec07c 100644 Binary files a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip and b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip differ diff --git a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip index bd5bb2a3..66e206bf 100644 Binary files a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip and b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip differ diff --git a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip index 840b6776..a3a9d661 100644 Binary files a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip and b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip differ diff --git a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip index 0e3bf55d..264b9b50 100644 Binary files a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip and b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index 3ff77281..1753f76f 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip index 3e11d301..26b188b2 100644 Binary files a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip and b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png index 5aac9208..aab04b0a 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png index 96686da2..2ae07aed 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png differ diff --git a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt index 2505a94b..6fc1c2f0 100644 --- a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt +++ b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt @@ -144,7 +144,7 @@ To check if the constructed PAG is a valid one in pywhy-graphs, we can simply do .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'S', 'L', 'PSH', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'PSH', 'S', 'I', 'G', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'S', 'L', 'PSH', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'PSH', 'S', 'I', 'G', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,7 +195,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.147 seconds) + **Total running time of the script:** (0 minutes 1.032 seconds) **Estimated memory usage:** 166 MB diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 980e44b0..3436974e 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,9 +241,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.241 seconds) + **Total running time of the script:** (0 minutes 0.966 seconds) -**Estimated memory usage:** 164 MB +**Estimated memory usage:** 165 MB .. _sphx_glr_download_auto_examples_intro_inducing_path.py: diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index ce007921..3a60f34c 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -307,8 +307,8 @@ in the graph. These unobserved confounders are graphically depicted with a bidir .. code-block:: none - ['x', 'z'] - The ADMG has confounded-components: [{'x', 'y'}, {'z'}, {'w'}] + ['z', 'x'] + The ADMG has confounded-components: [{'y', 'x'}, {'z'}, {'w'}] 'z' is d-separated from 'x': True 'z' is d-separated from 'x' given 'y': False 'z' is d-separated from 'x' after adding a bidirected edge z<->x: False @@ -427,7 +427,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.445 seconds) + **Total running time of the script:** (0 minutes 2.112 seconds) **Estimated memory usage:** 249 MB diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 30687ed3..29172550 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:04.834** total execution time for 3 files **from auto_examples/intro**: +**00:04.110** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.445 - - 249.2 - * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.241 - - 164.2 + - 00:02.112 + - 249.3 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.147 - - 165.6 + - 00:01.032 + - 166.4 + * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) + - 00:00.966 + - 164.7 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 2d30bddd..8dd1a768 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Y', 'Z', 'X'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['X', 'Z', 'Y'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,7 +312,7 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.390 seconds) + **Total running time of the script:** (0 minutes 1.275 seconds) **Estimated memory usage:** 170 MB diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index 937e8d62..67159555 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.390** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.275** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.390 - - 170.5 + - 00:01.275 + - 170.3 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index 58817536..d46ad7b6 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,9 +139,9 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.438 seconds) + **Total running time of the script:** (0 minutes 0.397 seconds) -**Estimated memory usage:** 164 MB +**Estimated memory usage:** 165 MB .. _sphx_glr_download_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py: diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index c0582fa0..1ce291c0 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,9 +136,9 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.146 seconds) + **Total running time of the script:** (0 minutes 0.958 seconds) -**Estimated memory usage:** 164 MB +**Estimated memory usage:** 165 MB .. _sphx_glr_download_auto_examples_visualization_plot_timeseries_graphs.py: diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index ad575387..d5770a18 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.584** total execution time for 2 files **from auto_examples/visualization**: +**00:01.354** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.146 - - 164.2 + - 00:00.958 + - 164.7 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.438 - - 164.2 + - 00:00.397 + - 164.9 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index 8146cf6a..3e725215 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:07.808** total execution time for 6 files **from all galleries**: +**00:06.740** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.445 - - 249.2 + - 00:02.112 + - 249.3 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.390 - - 170.5 - * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.241 - - 164.2 + - 00:01.275 + - 170.3 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.147 - - 165.6 + - 00:01.032 + - 166.4 + * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) + - 00:00.966 + - 164.7 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.146 - - 164.2 + - 00:00.958 + - 164.7 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.438 - - 164.2 + - 00:00.397 + - 164.9 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index 9229086e..bc84c80c 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -539,7 +539,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'S', 'L', 'PSH', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x740237cb5650>, included_edges=<networkx.classes.graph.Graph object at 0x740237cb5d50>, excluded_edges=<networkx.classes.graph.Graph object at 0x740237cb6190>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'S', 'I', 'G', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7391c5eda1d0>, included_edges=<networkx.classes.graph.Graph object at 0x7391c5eda8d0>, excluded_edges=<networkx.classes.graph.Graph object at 0x7391c5edad10>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -558,7 +558,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'S', 'L', 'PSH', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x740237cb9450>, included_edges=<networkx.classes.graph.Graph object at 0x740237cb9b50>, excluded_edges=<networkx.classes.graph.Graph object at 0x740237cb9f90>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'S', 'I', 'G', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7391c5ee63d0>, included_edges=<networkx.classes.graph.Graph object at 0x7391c5ee6ad0>, excluded_edges=<networkx.classes.graph.Graph object at 0x7391c5ee6f10>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -574,7 +574,7 @@

ReferencesTotal running time of the script: (0 minutes 1.147 seconds)

+

Total running time of the script: (0 minutes 1.032 seconds)

Estimated memory usage: 166 MB