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As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'G', 'S', 'I', 'PSH', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'PSH', 'S', 'L', 'G', 'I'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,7 +195,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.257 seconds) + **Total running time of the script:** (0 minutes 1.206 seconds) **Estimated memory usage:** 167 MB diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index d0f9c814..2ec0c0f3 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,7 +241,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.323 seconds) + **Total running time of the script:** (0 minutes 1.294 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index e0fbd5d2..4e0ec013 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -307,8 +307,8 @@ in the graph. These unobserved confounders are graphically depicted with a bidir .. code-block:: none - ['z', 'x'] - The ADMG has confounded-components: [{'y', 'x'}, {'z'}, {'w'}] + ['x', 'z'] + The ADMG has confounded-components: [{'x', 'y'}, {'z'}, {'w'}] 'z' is d-separated from 'x': True 'z' is d-separated from 'x' given 'y': False 'z' is d-separated from 'x' after adding a bidirected edge z<->x: False @@ -427,7 +427,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.607 seconds) + **Total running time of the script:** (0 minutes 2.782 seconds) **Estimated memory usage:** 252 MB diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 94c265a7..a0755e24 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:05.186** total execution time for 3 files **from auto_examples/intro**: +**00:05.282** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.607 - - 251.7 + - 00:02.782 + - 251.8 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.323 + - 00:01.294 - 165.1 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.257 + - 00:01.206 - 166.7 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index f17a7f21..79c6eff5 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['X', 'Z', 'Y'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Z', 'X', 'Y'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,7 +312,7 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.522 seconds) + **Total running time of the script:** (0 minutes 1.466 seconds) **Estimated memory usage:** 172 MB diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index dc99af21..b1d6d693 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.522** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.466** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.522 - - 171.7 + - 00:01.466 + - 171.6 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index 68c2783d..cfd0772f 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.446 seconds) + **Total running time of the script:** (0 minutes 0.449 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index c4db0dde..ce29070f 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.218 seconds) + **Total running time of the script:** (0 minutes 1.098 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index 7cd5f0fc..41b9ff8d 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.664** total execution time for 2 files **from auto_examples/visualization**: +**00:01.548** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.218 + - 00:01.098 - 165.1 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.446 + - 00:00.449 - 165.1 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index b23a9474..f1415e98 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:08.372** total execution time for 6 files **from all galleries**: +**00:08.296** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.607 - - 251.7 + - 00:02.782 + - 251.8 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.522 - - 171.7 + - 00:01.466 + - 171.6 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.323 + - 00:01.294 - 165.1 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.257 + - 00:01.206 - 166.7 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.218 + - 00:01.098 - 165.1 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.446 + - 00:00.449 - 165.1 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index 42bd5b41..93bcef34 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -566,7 +566,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'G', 'S', 'I', 'PSH', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7efb5d9de890>, included_edges=<networkx.classes.graph.Graph object at 0x7efb5d9def90>, excluded_edges=<networkx.classes.graph.Graph object at 0x7efb5d9df3d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'S', 'L', 'G', 'I'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f88f0a2a250>, included_edges=<networkx.classes.graph.Graph object at 0x7f88f0a2a950>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f88f0a2ad90>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -585,7 +585,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'G', 'S', 'I', 'PSH', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7efb5d9feb10>, included_edges=<networkx.classes.graph.Graph object at 0x7efb5d9ff210>, excluded_edges=<networkx.classes.graph.Graph object at 0x7efb5d9ff650>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'S', 'L', 'G', 'I'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f88f0a32750>, included_edges=<networkx.classes.graph.Graph object at 0x7f88f0a32e50>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f88f0a33290>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -601,7 +601,7 @@

ReferencesTotal running time of the script: (0 minutes 1.257 seconds)

+

Total running time of the script: (0 minutes 1.206 seconds)

Estimated memory usage: 167 MB