diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index bc4ccb847..a75247981 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip index d78ab51c7..d4e7d3f16 100644 Binary files a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip and b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip differ diff --git a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip index 596d9dceb..bbb8db455 100644 Binary files a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip and b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip differ diff --git a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip index bc59d4bbc..cc1010ccc 100644 Binary files a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip and b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip differ diff --git a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip index f4980126e..d1f600a77 100644 Binary files a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip and b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip differ diff --git a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip index 31fe46999..9ec62ab13 100644 Binary files a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip and b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index f7b3c7ec1..b752142dd 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip index 1a65e3033..9aa602bc2 100644 Binary files a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip and b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png index 9877efd7b..04190d1e4 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png index b0de586d4..0273e063f 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png differ diff --git a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt index 6af31dc6e..7da0f590d 100644 --- a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt +++ b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt @@ -144,7 +144,7 @@ To check if the constructed PAG is a valid one in pywhy-graphs, we can simply do .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'G', 'PSH', 'I', 'S', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'G', 'PSH', 'I', 'S', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,7 +195,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.184 seconds) + **Total running time of the script:** (0 minutes 1.438 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 6c0ee8a0f..646884c2e 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,9 +241,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.268 seconds) + **Total running time of the script:** (0 minutes 1.356 seconds) -**Estimated memory usage:** 164 MB +**Estimated memory usage:** 163 MB .. _sphx_glr_download_auto_examples_intro_inducing_path.py: diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index b0c00302a..d219d6474 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -427,9 +427,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.506 seconds) + **Total running time of the script:** (0 minutes 3.048 seconds) -**Estimated memory usage:** 250 MB +**Estimated memory usage:** 248 MB .. _sphx_glr_download_auto_examples_intro_intro_causal_graphs.py: diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 26fdaaf62..f42410d7a 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:04.958** total execution time for 3 files **from auto_examples/intro**: +**00:05.842** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.506 - - 250.0 - * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.268 - - 164.0 + - 00:03.048 + - 247.7 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.184 - - 165.1 + - 00:01.438 + - 164.6 + * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) + - 00:01.356 + - 163.2 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index fad5fabb9..538e14351 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Z', 'Y', 'X'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Y', 'Z', 'X'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,7 +312,7 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.466 seconds) + **Total running time of the script:** (0 minutes 1.702 seconds) **Estimated memory usage:** 170 MB diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index a0f8d5e8a..8d74698f1 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.466** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.702** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.466 - - 170.0 + - 00:01.702 + - 169.7 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index 264a47a5d..f211e8fa6 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,9 +139,9 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.440 seconds) + **Total running time of the script:** (0 minutes 0.497 seconds) -**Estimated memory usage:** 164 MB +**Estimated memory usage:** 163 MB .. _sphx_glr_download_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py: diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index e79af3d00..a305ac6d9 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,9 +136,9 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.108 seconds) + **Total running time of the script:** (0 minutes 1.125 seconds) -**Estimated memory usage:** 164 MB +**Estimated memory usage:** 163 MB .. _sphx_glr_download_auto_examples_visualization_plot_timeseries_graphs.py: diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index e04834cdc..329a60f53 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.548** total execution time for 2 files **from auto_examples/visualization**: +**00:01.622** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.108 - - 163.7 + - 00:01.125 + - 163.2 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.440 - - 163.7 + - 00:00.497 + - 163.2 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index 33484f889..aaae96baf 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:07.972** total execution time for 6 files **from all galleries**: +**00:09.165** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.506 - - 250.0 + - 00:03.048 + - 247.7 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.466 - - 170.0 - * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.268 - - 164.0 + - 00:01.702 + - 169.7 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.184 - - 165.1 + - 00:01.438 + - 164.6 + * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) + - 00:01.356 + - 163.2 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.108 - - 163.7 + - 00:01.125 + - 163.2 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.440 - - 163.7 + - 00:00.497 + - 163.2 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index f09f4cc0f..acc7ccf70 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -533,7 +533,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'G', 'PSH', 'I', 'S', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7ac7b8bba010>, included_edges=<networkx.classes.graph.Graph object at 0x7ac7b8bba710>, excluded_edges=<networkx.classes.graph.Graph object at 0x7ac7b8bbab50>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x72f55ea75bd0>, included_edges=<networkx.classes.graph.Graph object at 0x72f55ea762d0>, excluded_edges=<networkx.classes.graph.Graph object at 0x72f55ea76710>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -552,7 +552,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'G', 'PSH', 'I', 'S', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7ac7b8bd6710>, included_edges=<networkx.classes.graph.Graph object at 0x7ac7b8bd6e10>, excluded_edges=<networkx.classes.graph.Graph object at 0x7ac7b8bd7250>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x72f55ea92290>, included_edges=<networkx.classes.graph.Graph object at 0x72f55ea92990>, excluded_edges=<networkx.classes.graph.Graph object at 0x72f55ea92dd0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -568,7 +568,7 @@

ReferencesTotal running time of the script: (0 minutes 1.184 seconds)

+

Total running time of the script: (0 minutes 1.438 seconds)

Estimated memory usage: 165 MB