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state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'I', 'PSH', 'G', 'S', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'S', 'I', 'G', 'L', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,9 +195,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.376 seconds) + **Total running time of the script:** (0 minutes 1.308 seconds) -**Estimated memory usage:** 167 MB +**Estimated memory usage:** 166 MB .. _sphx_glr_download_auto_examples_intro_checking_validity_of_a_pag.py: diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 50b9df792..6b0b58a0e 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,7 +241,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.491 seconds) + **Total running time of the script:** (0 minutes 1.327 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index 9a809cca1..99784381d 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -308,7 +308,7 @@ in the graph. These unobserved confounders are graphically depicted with a bidir .. code-block:: none ['z', 'x'] - The ADMG has confounded-components: [{'y', 'x'}, {'z'}, {'w'}] + The ADMG has confounded-components: [{'x', 'y'}, {'z'}, {'w'}] 'z' is d-separated from 'x': True 'z' is d-separated from 'x' given 'y': False 'z' is d-separated from 'x' after adding a bidirected edge z<->x: False @@ -427,7 +427,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.813 seconds) + **Total running time of the script:** (0 minutes 2.610 seconds) **Estimated memory usage:** 251 MB diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 3f4444e5f..ad4dc06e2 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:05.680** total execution time for 3 files **from auto_examples/intro**: +**00:05.245** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.813 - - 251.5 + - 00:02.610 + - 251.2 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.491 - - 165.1 + - 00:01.327 + - 164.7 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.376 - - 166.6 + - 00:01.308 + - 166.3 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 05586cb34..743c448b1 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -312,9 +312,9 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.728 seconds) + **Total running time of the script:** (0 minutes 1.538 seconds) -**Estimated memory usage:** 172 MB +**Estimated memory usage:** 171 MB .. _sphx_glr_download_auto_examples_mixededge_plot_mixed_edge_graph.py: diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index 8701ae3f5..a22559fee 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.728** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.538** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.728 - - 171.6 + - 00:01.538 + - 171.4 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index baeb44a89..ae1ec2204 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.493 seconds) + **Total running time of the script:** (0 minutes 0.462 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index ec6b851de..74d543778 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.181 seconds) + **Total running time of the script:** (0 minutes 1.107 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index 5e1fea191..99311a8b2 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.675** total execution time for 2 files **from auto_examples/visualization**: +**00:01.569** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.181 - - 165.0 + - 00:01.107 + - 164.7 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.493 - - 165.0 + - 00:00.462 + - 164.7 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index 0516c6d84..c7b5b9b60 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:09.082** total execution time for 6 files **from all galleries**: +**00:08.351** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.813 - - 251.5 + - 00:02.610 + - 251.2 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.728 - - 171.6 + - 00:01.538 + - 171.4 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.491 - - 165.1 + - 00:01.327 + - 164.7 * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.376 - - 166.6 + - 00:01.308 + - 166.3 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.181 - - 165.0 + - 00:01.107 + - 164.7 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.493 - - 165.0 + - 00:00.462 + - 164.7 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index d21c3746b..1f817202a 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -533,7 +533,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'I', 'PSH', 'G', 'S', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f71e8b21ed0>, included_edges=<networkx.classes.graph.Graph object at 0x7f71e8b225d0>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f71e8b22a10>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'S', 'I', 'G', 'L', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fc97a2bdcd0>, included_edges=<networkx.classes.graph.Graph object at 0x7fc97a2be3d0>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fc97a2be810>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -552,7 +552,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'I', 'PSH', 'G', 'S', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f71e8b2a410>, included_edges=<networkx.classes.graph.Graph object at 0x7f71e8b2ab10>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f71e8b2af50>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'S', 'I', 'G', 'L', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fc97a2c6150>, included_edges=<networkx.classes.graph.Graph object at 0x7fc97a2c6850>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fc97a2c6c90>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -568,8 +568,8 @@

ReferencesTotal running time of the script: (0 minutes 1.376 seconds)

-

Estimated memory usage: 167 MB

+

Total running time of the script: (0 minutes 1.308 seconds)

+

Estimated memory usage: 166 MB