diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index 711337c93..64e169c1c 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip index 6bf793b4a..c1f5b23bd 100644 Binary files a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip and b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip differ diff --git a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip index 526b9574f..9fbd2f483 100644 Binary files a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip and b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip differ diff --git a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip index e5aa57eb0..1a97a96bf 100644 Binary files a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip and b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip differ diff --git a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip index 71c8f600a..899a1022a 100644 Binary files a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip and b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip differ diff --git a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip index c6ec1c6e8..4ef179db4 100644 Binary files a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip and b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index 23cf9224f..c92500002 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip index e8f9309f8..c30d06faa 100644 Binary files a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip and b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png index 53ecac6bb..0ce5c49ba 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png index e6d06b6d8..a3575f2ec 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png differ diff --git a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt index 0946f175c..e5ea93f9e 100644 --- a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt +++ b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt @@ -144,7 +144,7 @@ To check if the constructed PAG is a valid one in pywhy-graphs, we can simply do .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,7 +195,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.298 seconds) + **Total running time of the script:** (0 minutes 1.192 seconds) **Estimated memory usage:** 167 MB diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index f537c9fde..08be8f853 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,7 +241,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.202 seconds) + **Total running time of the script:** (0 minutes 1.301 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index fb152db20..0aad94704 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -427,9 +427,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.636 seconds) + **Total running time of the script:** (0 minutes 2.477 seconds) -**Estimated memory usage:** 251 MB +**Estimated memory usage:** 252 MB .. _sphx_glr_download_auto_examples_intro_intro_causal_graphs.py: diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 6545fa1ab..75707bd20 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:05.135** total execution time for 3 files **from auto_examples/intro**: +**00:04.970** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.636 - - 251.3 - * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.298 - - 166.7 + - 00:02.477 + - 251.6 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:01.202 - - 165.1 + - 00:01.301 + - 165.4 + * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) + - 00:01.192 + - 166.9 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 1d8d98ffc..05630cb44 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Z', 'X', 'Y'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['X', 'Z', 'Y'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,7 +312,7 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.564 seconds) + **Total running time of the script:** (0 minutes 1.475 seconds) **Estimated memory usage:** 172 MB diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index 9eeba096e..fae23e7cf 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.564** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.475** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.564 - - 171.5 + - 00:01.475 + - 171.9 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index 4322281f0..895cd69aa 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.464 seconds) + **Total running time of the script:** (0 minutes 0.439 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index f2a56f046..74d543778 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.114 seconds) + **Total running time of the script:** (0 minutes 1.107 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index 215ecade5..839bbdd67 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.577** total execution time for 2 files **from auto_examples/visualization**: +**00:01.546** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:01.114 - - 165.1 + - 00:01.107 + - 165.3 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.464 - - 165.1 + - 00:00.439 + - 165.3 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index 1998db6e8..6824fcb75 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:08.276** total execution time for 6 files **from all galleries**: +**00:07.991** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.636 - - 251.3 + - 00:02.477 + - 251.6 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.564 - - 171.5 - * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.298 - - 166.7 + - 00:01.475 + - 171.9 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:01.202 - - 165.1 + - 00:01.301 + - 165.4 + * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) + - 00:01.192 + - 166.9 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:01.114 - - 165.1 + - 00:01.107 + - 165.3 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.464 - - 165.1 + - 00:00.439 + - 165.3 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index 6d0cbb807..64465a7e7 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -566,7 +566,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f701227cc10>, included_edges=<networkx.classes.graph.Graph object at 0x7f701227d310>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f701227d750>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f39062f0650>, included_edges=<networkx.classes.graph.Graph object at 0x7f39062f0d50>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f39062f1190>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -585,7 +585,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'PSH', 'G', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f7012289590>, included_edges=<networkx.classes.graph.Graph object at 0x7f7012289c90>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f701228a0d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'S', 'I', 'L', 'G', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f3906304e90>, included_edges=<networkx.classes.graph.Graph object at 0x7f3906305590>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f39063059d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -601,7 +601,7 @@

ReferencesTotal running time of the script: (0 minutes 1.298 seconds)

+

Total running time of the script: (0 minutes 1.192 seconds)

Estimated memory usage: 167 MB