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As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'G', 'PSH', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'L', 'PSH', 'S', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,9 +195,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.971 seconds) + **Total running time of the script:** (0 minutes 1.188 seconds) -**Estimated memory usage:** 167 MB +**Estimated memory usage:** 166 MB .. _sphx_glr_download_auto_examples_intro_checking_validity_of_a_pag.py: diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index 7f6904a6..2a87a316 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,7 +241,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.950 seconds) + **Total running time of the script:** (0 minutes 1.277 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index d3b717c4..5ac9d0c5 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -307,8 +307,8 @@ in the graph. These unobserved confounders are graphically depicted with a bidir .. code-block:: none - ['z', 'x'] - The ADMG has confounded-components: [{'y', 'x'}, {'z'}, {'w'}] + ['x', 'z'] + The ADMG has confounded-components: [{'x', 'y'}, {'z'}, {'w'}] 'z' is d-separated from 'x': True 'z' is d-separated from 'x' given 'y': False 'z' is d-separated from 'x' after adding a bidirected edge z<->x: False @@ -427,9 +427,9 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.392 seconds) + **Total running time of the script:** (0 minutes 2.632 seconds) -**Estimated memory usage:** 252 MB +**Estimated memory usage:** 251 MB .. _sphx_glr_download_auto_examples_intro_intro_causal_graphs.py: diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 6c2d7d88..1e5148ef 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:04.313** total execution time for 3 files **from auto_examples/intro**: +**00:05.096** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.392 - - 251.7 - * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:00.971 - - 166.6 + - 00:02.632 + - 251.3 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:00.950 - - 165.2 + - 00:01.277 + - 164.6 + * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) + - 00:01.188 + - 166.1 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 9e7ee233..1852c26a 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['X', 'Z', 'Y'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Z', 'Y', 'X'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,7 +312,7 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.228 seconds) + **Total running time of the script:** (0 minutes 1.493 seconds) **Estimated memory usage:** 171 MB diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index d2134105..cc52d6bf 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.228** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.493** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.228 - - 171.4 + - 00:01.493 + - 171.0 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index 62a000f7..c75dd172 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.387 seconds) + **Total running time of the script:** (0 minutes 0.425 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index 7f6a4b52..078d242b 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.929 seconds) + **Total running time of the script:** (0 minutes 1.157 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index c6146466..f0f8e96b 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.315** total execution time for 2 files **from auto_examples/visualization**: +**00:01.581** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:00.929 - - 165.2 + - 00:01.157 + - 164.5 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.387 - - 165.2 + - 00:00.425 + - 164.5 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index d6100169..abf3fe31 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:06.857** total execution time for 6 files **from all galleries**: +**00:08.171** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.392 - - 251.7 + - 00:02.632 + - 251.3 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.228 - - 171.4 - * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:00.971 - - 166.6 + - 00:01.493 + - 171.0 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:00.950 - - 165.2 + - 00:01.277 + - 164.6 + * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) + - 00:01.188 + - 166.1 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:00.929 - - 165.2 + - 00:01.157 + - 164.5 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.387 - - 165.2 + - 00:00.425 + - 164.5 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index 6b4d8a71..39543c93 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -566,7 +566,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'G', 'PSH', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f5f5ddc3210>, included_edges=<networkx.classes.graph.Graph object at 0x7f5f5ddc3910>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f5f5ddc3d50>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'L', 'PSH', 'S', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fa9dc927950>, included_edges=<networkx.classes.graph.Graph object at 0x7fa9dc92c090>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fa9dc92c4d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -585,7 +585,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'G', 'PSH', 'S', 'I', 'L'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f5f5dda7750>, included_edges=<networkx.classes.graph.Graph object at 0x7f5f5dde6810>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f5f5dde7a10>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'L', 'PSH', 'S', 'I', 'G'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fa9dc930690>, included_edges=<networkx.classes.graph.Graph object at 0x7fa9dc930d90>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fa9dc9311d0>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -601,8 +601,8 @@

ReferencesTotal running time of the script: (0 minutes 0.971 seconds)

-

Estimated memory usage: 167 MB

+

Total running time of the script: (0 minutes 1.188 seconds)

+

Estimated memory usage: 166 MB