diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip index 5dd443153..013f6076e 100644 Binary files a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip and b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip differ diff --git a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip index d70c19c15..9284b16cf 100644 Binary files a/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip and b/dev/_downloads/10530a43ac11630eed6537826e6cfb1c/intro_causal_graphs.zip differ diff --git a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip index f19d70337..66b6a10bb 100644 Binary files a/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip and b/dev/_downloads/12ba5a8584767889bb8e73507ddec9b8/inducing_path.zip differ diff --git a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip index eb9742434..7baf08861 100644 Binary files a/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip and b/dev/_downloads/31332546815c10107083eb780f2415e1/plot_timeseries_graphs.zip differ diff --git a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip index d1517540d..efa631e92 100644 Binary files a/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip and b/dev/_downloads/57ddf7f10e7765791565f8e95db0ebe3/plot_mixed_edge_graph.zip differ diff --git a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip index 7d6ed0b7c..01d978eb7 100644 Binary files a/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip and b/dev/_downloads/6486e11b2b08016e1da22d99fc87866e/checking_validity_of_a_pag.zip differ diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip index 5a48f885d..024a9899a 100644 Binary files a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip and b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip differ diff --git a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip index e9ffc575f..7b6780bdf 100644 Binary files a/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip and b/dev/_downloads/f07f8c066c17b7e0cc44cf5f674bfc87/draw_and_compare_graphs_with_same_layout.zip differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png index 206fb1dcf..5538766c6 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_001.png differ diff --git a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png index 6387457c2..4745716a6 100644 Binary files a/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png and b/dev/_images/sphx_glr_plot_mixed_edge_graph_thumb.png differ diff --git a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt index 79f6afb58..78261ddd7 100644 --- a/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt +++ b/dev/_sources/auto_examples/intro/checking_validity_of_a_pag.rst.txt @@ -144,7 +144,7 @@ To check if the constructed PAG is a valid one in pywhy-graphs, we can simply do .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'L', 'I', 'PSH', 'G', 'S'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'L', 'S', 'G', 'I', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) True @@ -180,7 +180,7 @@ relationship. As such, the resulting graph is no longer a valid PAG. .. code-block:: none ConditioningSetSelection.PDS - Context(observed_variables={'L', 'I', 'PSH', 'G', 'S'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) + Context(observed_variables={'L', 'S', 'G', 'I', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=, included_edges=, excluded_edges=, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[]) False @@ -195,7 +195,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.110 seconds) + **Total running time of the script:** (0 minutes 1.284 seconds) **Estimated memory usage:** 166 MB diff --git a/dev/_sources/auto_examples/intro/inducing_path.rst.txt b/dev/_sources/auto_examples/intro/inducing_path.rst.txt index cedfb6fac..2d4711026 100644 --- a/dev/_sources/auto_examples/intro/inducing_path.rst.txt +++ b/dev/_sources/auto_examples/intro/inducing_path.rst.txt @@ -241,7 +241,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.986 seconds) + **Total running time of the script:** (0 minutes 1.320 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt index 3ea86d61b..8cefb5c68 100644 --- a/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt +++ b/dev/_sources/auto_examples/intro/intro_causal_graphs.rst.txt @@ -169,7 +169,7 @@ Here, we will simulate some data to understand causal graphs in the context of S .. code-block:: none - Fitting causal models: 0%| | 0/5 [00:00 + @@ -427,7 +427,7 @@ References .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 2.148 seconds) + **Total running time of the script:** (0 minutes 2.774 seconds) **Estimated memory usage:** 251 MB diff --git a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt index 66e9ae653..33a5343fb 100644 --- a/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/intro/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:04.244** total execution time for 3 files **from auto_examples/intro**: +**00:05.378** total execution time for 3 files **from auto_examples/intro**: .. container:: @@ -33,11 +33,11 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``intro_causal_graphs.py``) - - 00:02.148 - - 251.5 - * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) - - 00:01.110 - - 166.3 + - 00:02.774 + - 251.2 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``inducing_path.py``) - - 00:00.986 - - 164.8 + - 00:01.320 + - 164.9 + * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``checking_validity_of_a_pag.py``) + - 00:01.284 + - 166.5 diff --git a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt index 607214c6c..826c7a8b0 100644 --- a/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt +++ b/dev/_sources/auto_examples/mixededge/plot_mixed_edge_graph.rst.txt @@ -154,7 +154,7 @@ Mixed Edge Graph Properties MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types is directed: False because there are directed edges. False ['directed', 'bidirected'] - {'directed': , 'bidirected': } + {'directed': , 'bidirected': } @@ -194,7 +194,7 @@ Mixed Edge Graph Operations on Nodes .. code-block:: none - MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Y', 'Z', 'X'] + MixedEdgeGraph named 'IV Graph' with 3 nodes and 3 edges and 2 edge types has nodes: ['Z', 'Y', 'X'] Graph has node A: False Now graph has node A: True Graph has node A: False @@ -312,9 +312,9 @@ class properties. Moreover, one can specify the edge type. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 1.184 seconds) + **Total running time of the script:** (0 minutes 1.468 seconds) -**Estimated memory usage:** 171 MB +**Estimated memory usage:** 172 MB .. _sphx_glr_download_auto_examples_mixededge_plot_mixed_edge_graph.py: diff --git a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt index 9f07cd080..070c53977 100644 --- a/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/mixededge/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.184** total execution time for 1 file **from auto_examples/mixededge**: +**00:01.468** total execution time for 1 file **from auto_examples/mixededge**: .. container:: @@ -33,5 +33,5 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``plot_mixed_edge_graph.py``) - - 00:01.184 - - 171.3 + - 00:01.468 + - 171.6 diff --git a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt index 2e72ad1fa..65c67c8d1 100644 --- a/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt +++ b/dev/_sources/auto_examples/visualization/draw_and_compare_graphs_with_same_layout.rst.txt @@ -139,7 +139,7 @@ such as `Dagitty `_. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.418 seconds) + **Total running time of the script:** (0 minutes 0.516 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt index 905343dcd..348453ddf 100644 --- a/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt +++ b/dev/_sources/auto_examples/visualization/plot_timeseries_graphs.rst.txt @@ -136,7 +136,7 @@ which creates a nice default layout for time-series graphs. .. rst-class:: sphx-glr-timing - **Total running time of the script:** (0 minutes 0.957 seconds) + **Total running time of the script:** (0 minutes 1.131 seconds) **Estimated memory usage:** 165 MB diff --git a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt index 695dbb229..a1a856804 100644 --- a/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt +++ b/dev/_sources/auto_examples/visualization/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:01.376** total execution time for 2 files **from auto_examples/visualization**: +**00:01.647** total execution time for 2 files **from auto_examples/visualization**: .. container:: @@ -33,8 +33,8 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``plot_timeseries_graphs.py``) - - 00:00.957 - - 164.8 + - 00:01.131 + - 164.9 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``draw_and_compare_graphs_with_same_layout.py``) - - 00:00.418 - - 164.8 + - 00:00.516 + - 164.9 diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt index 171e1e0a3..52a077d9a 100644 --- a/dev/_sources/sg_execution_times.rst.txt +++ b/dev/_sources/sg_execution_times.rst.txt @@ -6,7 +6,7 @@ Computation times ================= -**00:06.804** total execution time for 6 files **from all galleries**: +**00:08.493** total execution time for 6 files **from all galleries**: .. container:: @@ -33,20 +33,20 @@ Computation times - Time - Mem (MB) * - :ref:`sphx_glr_auto_examples_intro_intro_causal_graphs.py` (``../examples/intro/intro_causal_graphs.py``) - - 00:02.148 - - 251.5 + - 00:02.774 + - 251.2 * - :ref:`sphx_glr_auto_examples_mixededge_plot_mixed_edge_graph.py` (``../examples/mixededge/plot_mixed_edge_graph.py``) - - 00:01.184 - - 171.3 - * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) - - 00:01.110 - - 166.3 + - 00:01.468 + - 171.6 * - :ref:`sphx_glr_auto_examples_intro_inducing_path.py` (``../examples/intro/inducing_path.py``) - - 00:00.986 - - 164.8 + - 00:01.320 + - 164.9 + * - :ref:`sphx_glr_auto_examples_intro_checking_validity_of_a_pag.py` (``../examples/intro/checking_validity_of_a_pag.py``) + - 00:01.284 + - 166.5 * - :ref:`sphx_glr_auto_examples_visualization_plot_timeseries_graphs.py` (``../examples/visualization/plot_timeseries_graphs.py``) - - 00:00.957 - - 164.8 + - 00:01.131 + - 164.9 * - :ref:`sphx_glr_auto_examples_visualization_draw_and_compare_graphs_with_same_layout.py` (``../examples/visualization/draw_and_compare_graphs_with_same_layout.py``) - - 00:00.418 - - 164.8 + - 00:00.516 + - 164.9 diff --git a/dev/auto_examples/intro/checking_validity_of_a_pag.html b/dev/auto_examples/intro/checking_validity_of_a_pag.html index fa3426003..65267ae58 100644 --- a/dev/auto_examples/intro/checking_validity_of_a_pag.html +++ b/dev/auto_examples/intro/checking_validity_of_a_pag.html @@ -533,7 +533,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'L', 'I', 'PSH', 'G', 'S'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f1044a99950>, included_edges=<networkx.classes.graph.Graph object at 0x7f1044a9a050>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f1044a9a490>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'L', 'S', 'G', 'I', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fa38092d9d0>, included_edges=<networkx.classes.graph.Graph object at 0x7fa38092e0d0>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fa38092e510>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 True
@@ -552,7 +552,7 @@

Validity of a PAG
ConditioningSetSelection.PDS
-Context(observed_variables={'L', 'I', 'PSH', 'G', 'S'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7f1044aadf10>, included_edges=<networkx.classes.graph.Graph object at 0x7f1044aae610>, excluded_edges=<networkx.classes.graph.Graph object at 0x7f1044aaea50>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
+Context(observed_variables={'L', 'S', 'G', 'I', 'PSH'}, latent_variables=set(), state_variables={}, init_graph=<networkx.classes.graph.Graph object at 0x7fa380942010>, included_edges=<networkx.classes.graph.Graph object at 0x7fa380942710>, excluded_edges=<networkx.classes.graph.Graph object at 0x7fa380942b50>, num_distributions=1, obs_distribution=True, intervention_targets=[], symmetric_diff_map={}, sigma_map={}, f_nodes=[], num_domains=1, domain_map={}, s_nodes=[])
 False
@@ -568,7 +568,7 @@

ReferencesTotal running time of the script: (0 minutes 1.110 seconds)

+

Total running time of the script: (0 minutes 1.284 seconds)

Estimated memory usage: 166 MB