We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Traceback (most recent call last): File "c:\Users\HARITHA A\Desktop\work\current work\practise\new.py", line 63, in print('midpoint_coverage ', midpoint_cov(frg_mid_point(frg_flank), sample_file_cov(chr))) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "c:\Users\HARITHA A\Desktop\work\current work\practise\new.py", line 61, in midpoint_cov midpoint_coverage = (frg_midpoint_range.to_rle()).astype(np.int64) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\pyranges_main.py", line 5881, in to_rle return _to_rle(self, value_col, strand=strand, rpm=rpm, nb_cpu=nb_cpu) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\methods\to_rle.py", line 18, in _to_rle result = pyrange_apply_single(coverage, ranges, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\multithreaded.py", line 342, in pyrange_apply_single result = call_f_single(function, nparams, df, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\multithreaded.py", line 28, in call_f_single return f.remote(df, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyrle\methods.py", line 154, in coverage runs, values = _coverage(_df.Position.values, _df.Value.values) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "pyrle\src\coverage.pyx", line 28, in pyrle.src.coverage._coverage ValueError: Buffer dtype mismatch, expected 'long' but got 'long long'
The text was updated successfully, but these errors were encountered:
While running to rle () function shows the above errors
Sorry, something went wrong.
I do not have any way to test and debug stuff on windows unfortunately. I'd accept PRs
No branches or pull requests
Traceback (most recent call last):
File "c:\Users\HARITHA A\Desktop\work\current work\practise\new.py", line 63, in
print('midpoint_coverage ', midpoint_cov(frg_mid_point(frg_flank), sample_file_cov(chr)))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "c:\Users\HARITHA A\Desktop\work\current work\practise\new.py", line 61, in midpoint_cov
midpoint_coverage = (frg_midpoint_range.to_rle()).astype(np.int64)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\pyranges_main.py", line 5881, in to_rle
return _to_rle(self, value_col, strand=strand, rpm=rpm, nb_cpu=nb_cpu)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\methods\to_rle.py", line 18, in _to_rle
result = pyrange_apply_single(coverage, ranges, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\multithreaded.py", line 342, in pyrange_apply_single
result = call_f_single(function, nparams, df, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\multithreaded.py", line 28, in call_f_single
return f.remote(df, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyrle\methods.py", line 154, in coverage
runs, values = _coverage(_df.Position.values, _df.Value.values)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "pyrle\src\coverage.pyx", line 28, in pyrle.src.coverage._coverage
ValueError: Buffer dtype mismatch, expected 'long' but got 'long long'
The text was updated successfully, but these errors were encountered: