From 71c432be4d344fb3ddc0a84272bbee3e4259c10b Mon Sep 17 00:00:00 2001 From: Antonio Gonzalez Date: Sat, 12 Oct 2024 06:16:46 -0600 Subject: [PATCH] rm nltk --- CHANGELOG.md | 1 + setup.py | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 41c4c821b..cf1531772 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,6 +15,7 @@ Deployed on October 14th, 2024 * `Remove SynDNA reads` superseded `SynDNA Woltka`, which now generates even mates. * `Woltka v0.1.7, paired-end` superseded `Woltka v0.1.6` in `qp-woltka`; [more information](https://qiita.ucsd.edu/static/doc/html/processingdata/woltka_pairedend.html). Thank you to @qiyunzhu for the benchmarks! * Other general fixes, like [#3424](https://github.com/qiita-spots/qiita/pull/3424), [#3425](https://github.com/qiita-spots/qiita/pull/3425). +* We updated the available parameters for `Filter features against reference [filter_features]`, `Non V4 16S sequence assessment [non_v4_16s]` and all the phylogenetic analytical commands so they can use `Greengenes2 2024.09`. Version 2024.07 diff --git a/setup.py b/setup.py index 230cec3a2..a480c0bd8 100644 --- a/setup.py +++ b/setup.py @@ -105,7 +105,7 @@ install_requires=['psycopg2', 'click', 'bcrypt', 'pandas<2.0', 'biom-format', 'tornado<6.0', 'toredis', 'redis', 'scp', 'pyparsing', 'h5py', 'natsort', 'nose', 'pep8', - 'networkx', 'humanize', 'wtforms<3.0.0', 'nltk<=3.8.1', + 'networkx', 'humanize', 'wtforms<3.0.0', 'openpyxl', 'sphinx-bootstrap-theme', 'Sphinx<3.0', 'gitpython', 'redbiom', 'pyzmq', 'sphinx_rtd_theme', 'paramiko', 'seaborn', 'matplotlib', 'scipy<=1.10.1',