From 91f517c206516433378bb2c1fe432d8106b5bef0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marco=20Bertani-=C3=98kland?= Date: Wed, 22 Dec 2021 19:59:13 +0100 Subject: [PATCH 1/4] feat: pyenv + poetry environment; python 3.8.12 --- Makefile | 19 + poetry.lock | 2932 ++++++++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 30 + 3 files changed, 2981 insertions(+) create mode 100644 Makefile create mode 100644 poetry.lock create mode 100644 pyproject.toml diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..8eecb15 --- /dev/null +++ b/Makefile @@ -0,0 +1,19 @@ +.DEFAULT_GOAL:=help + +# -------------------------- +.PHONY: install jupyter pyenv + +pyenv: ## Create the env with pyenv + pyenv virtualenv -f 3.8.12 islp + pyenv local islp + @make install + +install: ## Install python environment + poetry install + +jupyter: ## Run jupyter lab + poetry run jupyter lab + +help: ## Show this help. + @echo "Make for ISLP" + @awk 'BEGIN {FS = ":.*##"; printf "\nUsage:\n make \033[36m\033[0m (default: help)\n\nTargets:\n"} /^[a-zA-Z_-]+:.*?##/ { printf " \033[36m%-12s\033[0m %s\n", $$1, $$2 }' $(MAKEFILE_LIST) diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..19ee8f4 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2932 @@ +[[package]] +name = "absl-py" +version = "1.0.0" +description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +six = "*" + +[[package]] +name = "anyio" +version = "3.4.0" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +category = "main" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +idna = ">=2.8" +sniffio = ">=1.1" + +[package.extras] +doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] +test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", 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"^0.13.1" +scikit-learn = "^1.0.1" +seaborn = "^0.11.2" +tensorflow = "^2.7.0" +keras = "^2.7.0" +lifelines = "^0.26.4" + +[tool.poetry.dev-dependencies] + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" From 141aa60f44a232780b308a27dea6b745a3099758 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marco=20Bertani-=C3=98kland?= Date: Mon, 3 Jan 2022 12:14:10 +0100 Subject: [PATCH 2/4] Remove superfluous dependencies --- README.md | 42 ++++++----- poetry.lock | 185 +------------------------------------------------ pyproject.toml | 6 -- 3 files changed, 25 insertions(+), 208 deletions(-) diff --git a/README.md b/README.md index 9b65129..4792477 100644 --- a/README.md +++ b/README.md @@ -8,25 +8,31 @@ In this repository, I have implemented the same/similar functionality in Python. Please refer https://www.statlearning.com/ for more details. In 2nd Edition, the authors introduced a R library ISLR2 for all the dataset used in the book. ### Setup for this repository: -* Python==3.6.2 -* ipykernal==4.10.0 -* numpy==1.19.2 -* matplotlib==3.3.4 -* pandas==1.1.5 -* statsmodels==0.12.2 -* scikit-learn==0.21.1 -* patsy==0.5.1 -* scipy==1.5.2 -* seaborn==0.11.2 -* json==2.0.9 -* tensorflow==2.0.0 -* keras==2.3.1 -* lifelines==0.26.3 -* math -* random -* collections -* itertools +The python environment is managed with [poetry](https://python-poetry.org/) and [pyenv](https://github.com/pyenv/pyenv). + +To setup the environment run: + +1. Make sure you have `pyenv` installed on your system, with the [pyenv-virtualenv](https://github.com/pyenv/pyenv-virtualenv) plugin. +2. Run `make pyenv`. This will install pyhton 3.8.12 on your environment, create a virtual local environment `islp` and assign it to this repo. +3. Run `make jupyter` to start an instance of jupyter lab. +4. Open and run the notebooks. + + +The dependencies can be seen from [pyproject.toml]() under `[tool.poetry.dependencies]`: +``` +python = "3.8.12" +jupyterlab = "^3.2.4" +pandas = "^1.3.4" +numpy = "^1.21.5" +matplotlib = "^3.5.1" +statsmodels = "^0.13.1" +scikit-learn = "^1.0.1" +seaborn = "^0.11.2" +tensorflow = "^2.7.0" +keras = "^2.7.0" +lifelines = "^0.26.4" +``` ### Special thanks to Bommy diff --git a/poetry.lock b/poetry.lock index 19ee8f4..088d73a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -141,29 +141,6 @@ category = "main" optional = false python-versions = "*" -[[package]] -name = "black" -version = "21.12b0" -description = "The uncompromising code formatter." -category = "main" -optional = false -python-versions = ">=3.6.2" - -[package.dependencies] -click = ">=7.1.2" -mypy-extensions = ">=0.4.3" -pathspec = ">=0.9.0,<1" -platformdirs = ">=2" -tomli = ">=0.2.6,<2.0.0" -typing-extensions = ">=3.10.0.0" - -[package.extras] -colorama = ["colorama (>=0.4.3)"] -d = ["aiohttp (>=3.7.4)"] -jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] -python2 = ["typed-ast (>=1.4.3)"] -uvloop = ["uvloop (>=0.15.2)"] - 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