From 723dcfffcbb4e0695a5ff2390fa2bf26b8295a2a Mon Sep 17 00:00:00 2001 From: manishshettym Date: Thu, 17 Oct 2024 12:23:32 -0700 Subject: [PATCH 1/9] docs: bump readme --- r2e/generators/specgen/README.md | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 r2e/generators/specgen/README.md diff --git a/r2e/generators/specgen/README.md b/r2e/generators/specgen/README.md new file mode 100644 index 0000000..48a1b1c --- /dev/null +++ b/r2e/generators/specgen/README.md @@ -0,0 +1,19 @@ +# Spec Refinement + +Relevant Code: [SpecGenerator](./r2e/generators/specgen/generate.py) + +While the user is free to choose the extracted functions to benchmark code LLMs and programming agents, we provide some tools and strategies to build robust benchmarks based on our study. + +**Improving Specifications:** We believe that natural language docstrings in GitHub repos might +be ambiguous or under-specified for use in code generation. We provide an automated approach to refine these docstrings using language models by providing them useful information on the observed behavior of the function when executed using the generated test harness +```bash +python r2e/generators/specgen/generate.py + -i + --exp_id + --multiprocess + --cache_batch_size +``` + +> [!Note] +> +> The input file must be functions that _have been executed_ using tests from the previous section. The results of execution, such as I/O examples, type signatures, etc., are provided to the LLM for refinement. More details on this in our [paper](r2e.dev/pdfs/r2e_paper.pdf). \ No newline at end of file From 88df61f788af532e4d0da6a356c9cca4ce671da3 Mon Sep 17 00:00:00 2001 From: manishshettym Date: Thu, 17 Oct 2024 12:24:46 -0700 Subject: [PATCH 2/9] docs: bump readme --- README.md | 29 +++-------------------------- 1 file changed, 3 insertions(+), 26 deletions(-) diff --git a/README.md b/README.md index c7b1cfb..074d78b 100644 --- a/README.md +++ b/README.md @@ -215,34 +215,11 @@ python r2e/generators/testgen/oversample.py --cache_batch_size ``` -## Building benchmarks with R2E +## Additional Resources -Relevant Code: [SpecGenerator](./r2e/generators/specgen/generate.py) +1. **Improving Specifications:**: Find details about improving the specifications of extracted functions to build benchmarks using LLMs @ [Spec Refinement](./r2e/generators/specgen/README.md). -While the user is free to choose the extracted functions to benchmark code LLMs and programming agents, we provide some tools and strategies to build robust benchmarks based on our study. - -**Improving Specifications:** We believe that natural language docstrings in GitHub repos might -be ambiguous or under-specified for use in code generation. We provide an automated approach to refine these docstrings using language models by providing them useful information on the observed behavior of the function when executed using the generated test harness -```bash -python r2e/generators/specgen/generate.py - -i - --exp_id - --multiprocess - --cache_batch_size -``` - -> [!Note] -> -> The input file must be functions that _have been executed_ using tests from the previous section. The results of execution, such as I/O examples, type signatures, etc., are provided to the LLM for refinement. More details on this in our [paper](r2e.dev/pdfs/r2e_paper.pdf). - -## Other Details - -#### PAT: Program Analysis Tools -R2E is powered by a synergistic combination of program analysis and LLMs. We implemented a new toolbox of analysis tools for Python, which we call [⚒ PAT](./r2e/pat). For more details on what these tools enable and how they are used, please refer to the [PAT documentation](./r2e/pat/README.md). - ---- - -For more details on the R2E project, refer to [r2e.dev](https://r2e.dev)! +2. **PAT: Program Analysis Tools**: We developed an in-house program and static analysis toolbox that powers R2E along with LLMs. These tools can be used independently too. Learn more about them @ [PAT](./r2e/pat/README.md). ## Citation From c79e421bdddfe87e45987e625e4ba9b7c0d9bd78 Mon Sep 17 00:00:00 2001 From: manishshettym Date: Fri, 18 Oct 2024 02:06:18 -0700 Subject: [PATCH 3/9] refactor: use uv, reorganize repo, and add optional parameter for single function generation and execution --- poetry.lock | 6041 ----------------- pyproject.toml | 88 +- {r2e => src/r2e}/__init__.py | 0 {r2e => src/r2e}/config.yml | 0 {r2e => src/r2e}/evaluators/__init__.py | 0 {r2e => src/r2e}/evaluators/testgen.py | 0 {r2e => src/r2e}/execution/__init__.py | 0 {r2e => src/r2e}/execution/args.py | 2 +- {r2e => src/r2e}/execution/execute.py | 0 {r2e => src/r2e}/execution/helpers.py | 0 {r2e => src/r2e}/execution/r2e_simulator.py | 0 {r2e => src/r2e}/execution/service.py | 0 {r2e => src/r2e}/execution/utils.py | 0 {r2e => src/r2e}/generators/__init__.py | 0 .../r2e}/generators/context/__init__.py | 0 {r2e => src/r2e}/generators/context/base.py | 0 {r2e => 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= "^6.29.4" -ipywidgets = "^8.1.2" -gitpython = "^3.1.43" -matplotlib = "^3.8.3" -jsonlines = "^4.0.0" -pebble = "^5.0.7" -openpyxl = "^3.1.2" -flask = "^3.0.2" -tqdm = "^4.66.2" -docker = "^7.0.0" -black = "^24.3.0" -coverage = "^7.4.4" -termcolor = "^2.4.0" -openai = "^1.16.0" -tiktoken = "^0.6.0" -setuptools = "^69.2.0" -isort = "^5.13.2" -datasets = "^2.18.0" -seaborn = "^0.13.2" -anthropic = "^0.21.3" -mypy = "^1.9.0" -pytest = "^8.1.1" -pyright = "^1.1.357" -rich = "^13.7.1" -pycg = "^0.0.8" -networkx = "^3.3" -rpyc = "^6.0.0" -nltk = "^3.8.1" -fire = "^0.6.0" -skypilot = {extras = ["gcp"], version = "^0.5.0"} -tomlkit = "^0.12.4" -r2e-test-server = "^0.1.5" - -[tool.poetry.group.with-gpu] -optional = true - -[tool.poetry.group.with-gpu.dependencies] -vllm = "^0.4.1" +authors = [{name = "Your Name", email = "you@example.com"}] +dependencies = [ + "anthropic>=0.21.3", + "black>=24.3.0", + "coverage>=7.4.4", + "datasets>=2.18.0", + "docker>=7.0.0", + "fire>=0.6.0", + "flask>=3.0.2", + "gitpython>=3.1.43", + "ipykernel>=6.29.4", + "ipywidgets>=8.1.2", + "isort>=5.13.2", + "jsonlines>=4.0.0", + "matplotlib>=3.8.3", + "mypy>=1.9.0", + "networkx>=3.3", + "nltk>=3.8.1", + "openai>=1.16.0", + "openpyxl>=3.1.2", + "pebble>=5.0.7", + "pycg>=0.0.8", + "pyright>=1.1.357", + "pytest>=8.1.1", + "rich>=13.7.1", + "rpyc>=6.0.0", + "seaborn>=0.13.2", + "setuptools>=69.2.0", + "skypilot[gcp]>=0.5.0", + "termcolor>=2.4.0", + "tiktoken>=0.6.0", + "tomlkit>=0.12.4", + "tqdm>=4.66.2", + "vllm>=0.4.1", + "r2e-test-server>=0.1.8", +] [build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +requires = ["hatchling"] +build-backend = "hatchling.build" + +[project.scripts] +r2e = "r2e.cli:r2e" diff --git a/r2e/__init__.py b/src/r2e/__init__.py similarity index 100% rename from r2e/__init__.py rename to src/r2e/__init__.py diff --git a/r2e/config.yml b/src/r2e/config.yml similarity index 100% rename from r2e/config.yml rename to src/r2e/config.yml diff --git a/r2e/evaluators/__init__.py b/src/r2e/evaluators/__init__.py similarity index 100% rename from r2e/evaluators/__init__.py rename to src/r2e/evaluators/__init__.py diff --git a/r2e/evaluators/testgen.py b/src/r2e/evaluators/testgen.py similarity index 100% rename from r2e/evaluators/testgen.py rename to src/r2e/evaluators/testgen.py diff --git a/r2e/execution/__init__.py b/src/r2e/execution/__init__.py similarity index 100% rename from r2e/execution/__init__.py rename to src/r2e/execution/__init__.py diff --git a/r2e/execution/args.py b/src/r2e/execution/args.py similarity index 97% rename from r2e/execution/args.py rename to src/r2e/execution/args.py index f87b1b6..51cd4e4 100644 --- a/r2e/execution/args.py +++ b/src/r2e/execution/args.py @@ -28,7 +28,7 @@ class ExecutionArgs(BaseModel): description="Whether to run the execution service locally", ) - function: str = Field( + function: str | None = Field( None, description="A specific function to generate tests for", ) diff --git a/r2e/execution/execute.py b/src/r2e/execution/execute.py similarity index 100% rename from r2e/execution/execute.py rename to src/r2e/execution/execute.py diff --git a/r2e/execution/helpers.py b/src/r2e/execution/helpers.py similarity index 100% rename from r2e/execution/helpers.py rename to src/r2e/execution/helpers.py diff --git a/r2e/execution/r2e_simulator.py b/src/r2e/execution/r2e_simulator.py similarity index 100% rename from r2e/execution/r2e_simulator.py rename to src/r2e/execution/r2e_simulator.py diff --git a/r2e/execution/service.py b/src/r2e/execution/service.py similarity index 100% rename from r2e/execution/service.py rename to src/r2e/execution/service.py diff --git a/r2e/execution/utils.py b/src/r2e/execution/utils.py similarity index 100% rename from r2e/execution/utils.py rename to src/r2e/execution/utils.py diff --git a/r2e/generators/__init__.py b/src/r2e/generators/__init__.py similarity index 100% rename from r2e/generators/__init__.py rename to src/r2e/generators/__init__.py diff --git a/r2e/generators/context/__init__.py b/src/r2e/generators/context/__init__.py similarity index 100% rename from r2e/generators/context/__init__.py rename to src/r2e/generators/context/__init__.py diff --git a/r2e/generators/context/base.py b/src/r2e/generators/context/base.py similarity index 100% rename from r2e/generators/context/base.py rename to src/r2e/generators/context/base.py diff --git a/r2e/generators/context/format.py b/src/r2e/generators/context/format.py similarity index 100% rename from r2e/generators/context/format.py rename to src/r2e/generators/context/format.py diff --git a/r2e/generators/context/full.py b/src/r2e/generators/context/full.py similarity index 100% rename from r2e/generators/context/full.py rename to src/r2e/generators/context/full.py diff --git a/r2e/generators/context/manager.py b/src/r2e/generators/context/manager.py similarity index 100% rename from r2e/generators/context/manager.py rename to src/r2e/generators/context/manager.py diff --git a/r2e/generators/context/sliced.py b/src/r2e/generators/context/sliced.py similarity index 100% rename from r2e/generators/context/sliced.py rename to src/r2e/generators/context/sliced.py diff --git a/r2e/generators/context/utils.py b/src/r2e/generators/context/utils.py similarity index 100% rename from r2e/generators/context/utils.py rename to src/r2e/generators/context/utils.py diff --git a/r2e/generators/specgen/README.md b/src/r2e/generators/specgen/README.md similarity index 100% rename from r2e/generators/specgen/README.md rename to src/r2e/generators/specgen/README.md diff --git a/r2e/generators/specgen/__init__.py b/src/r2e/generators/specgen/__init__.py similarity index 100% rename from r2e/generators/specgen/__init__.py rename to src/r2e/generators/specgen/__init__.py diff --git a/r2e/generators/specgen/args.py b/src/r2e/generators/specgen/args.py similarity index 100% rename from r2e/generators/specgen/args.py rename to src/r2e/generators/specgen/args.py diff --git a/r2e/generators/specgen/generate.py b/src/r2e/generators/specgen/generate.py similarity index 100% rename from r2e/generators/specgen/generate.py rename to src/r2e/generators/specgen/generate.py diff --git a/r2e/generators/specgen/prompt.py b/src/r2e/generators/specgen/prompt.py similarity index 100% rename from r2e/generators/specgen/prompt.py rename to src/r2e/generators/specgen/prompt.py diff --git a/r2e/generators/specgen/task.py b/src/r2e/generators/specgen/task.py similarity index 100% rename from r2e/generators/specgen/task.py rename to src/r2e/generators/specgen/task.py diff --git a/r2e/generators/specgen/utils.py b/src/r2e/generators/specgen/utils.py similarity index 100% rename from r2e/generators/specgen/utils.py rename to src/r2e/generators/specgen/utils.py diff --git a/r2e/generators/testgen/__init__.py b/src/r2e/generators/testgen/__init__.py similarity index 100% rename from r2e/generators/testgen/__init__.py rename to src/r2e/generators/testgen/__init__.py diff --git a/r2e/generators/testgen/args.py b/src/r2e/generators/testgen/args.py similarity index 97% rename from r2e/generators/testgen/args.py rename to src/r2e/generators/testgen/args.py index 36e5077..3833910 100644 --- a/r2e/generators/testgen/args.py +++ b/src/r2e/generators/testgen/args.py @@ -22,7 +22,7 @@ class TestGenArgs(LLMArgs): description="The input file for the test generator", ) - function: str = Field( + function: str | None = Field( None, description="A specific function to generate tests for", ) diff --git a/r2e/generators/testgen/generate.py b/src/r2e/generators/testgen/generate.py similarity index 100% rename from r2e/generators/testgen/generate.py rename to src/r2e/generators/testgen/generate.py diff --git a/r2e/generators/testgen/genexec.py b/src/r2e/generators/testgen/genexec.py similarity index 100% rename from r2e/generators/testgen/genexec.py rename to src/r2e/generators/testgen/genexec.py diff --git a/r2e/generators/testgen/oversample.py b/src/r2e/generators/testgen/oversample.py similarity index 100% rename from r2e/generators/testgen/oversample.py rename to src/r2e/generators/testgen/oversample.py diff --git a/r2e/generators/testgen/prompt.py b/src/r2e/generators/testgen/prompt.py similarity index 100% rename from r2e/generators/testgen/prompt.py rename to src/r2e/generators/testgen/prompt.py diff --git a/r2e/generators/testgen/task.py b/src/r2e/generators/testgen/task.py similarity index 100% rename from r2e/generators/testgen/task.py rename to src/r2e/generators/testgen/task.py diff --git a/r2e/generators/testgen/utils.py b/src/r2e/generators/testgen/utils.py similarity index 100% rename from r2e/generators/testgen/utils.py rename to src/r2e/generators/testgen/utils.py diff --git a/r2e/llms/__init__.py b/src/r2e/llms/__init__.py similarity index 100% rename from r2e/llms/__init__.py rename to src/r2e/llms/__init__.py diff --git a/r2e/llms/base_runner.py b/src/r2e/llms/base_runner.py similarity index 100% rename from r2e/llms/base_runner.py rename to src/r2e/llms/base_runner.py diff --git a/r2e/llms/cache_object.py b/src/r2e/llms/cache_object.py similarity index 100% rename from r2e/llms/cache_object.py rename to src/r2e/llms/cache_object.py diff --git a/r2e/llms/completions.py b/src/r2e/llms/completions.py similarity index 100% rename from r2e/llms/completions.py rename to src/r2e/llms/completions.py diff --git a/r2e/llms/language_model.py b/src/r2e/llms/language_model.py similarity index 100% rename from r2e/llms/language_model.py rename to src/r2e/llms/language_model.py diff --git a/r2e/llms/llm_args.py b/src/r2e/llms/llm_args.py similarity index 100% rename from r2e/llms/llm_args.py rename to src/r2e/llms/llm_args.py diff --git a/r2e/llms/openai_runner.py b/src/r2e/llms/openai_runner.py similarity index 100% rename from r2e/llms/openai_runner.py rename to src/r2e/llms/openai_runner.py diff --git a/r2e/llms/vllm_runner.py b/src/r2e/llms/vllm_runner.py similarity index 100% rename from r2e/llms/vllm_runner.py rename to src/r2e/llms/vllm_runner.py diff --git a/r2e/logger.py b/src/r2e/logger.py similarity index 100% rename from r2e/logger.py rename to src/r2e/logger.py diff --git a/r2e/models/__init__.py b/src/r2e/models/__init__.py similarity index 100% rename from r2e/models/__init__.py rename to src/r2e/models/__init__.py diff --git a/r2e/models/callgraph.py b/src/r2e/models/callgraph.py similarity index 100% rename from r2e/models/callgraph.py rename to src/r2e/models/callgraph.py diff --git a/r2e/models/classes.py b/src/r2e/models/classes.py similarity index 100% rename from r2e/models/classes.py rename to src/r2e/models/classes.py diff --git a/r2e/models/codegen_problem.py b/src/r2e/models/codegen_problem.py similarity index 100% rename from r2e/models/codegen_problem.py rename to src/r2e/models/codegen_problem.py diff --git a/r2e/models/context.py b/src/r2e/models/context.py similarity index 100% rename from r2e/models/context.py rename to src/r2e/models/context.py diff --git a/r2e/models/file.py b/src/r2e/models/file.py similarity index 100% rename from r2e/models/file.py rename to src/r2e/models/file.py diff --git a/r2e/models/function.py b/src/r2e/models/function.py similarity index 100% rename from r2e/models/function.py rename to src/r2e/models/function.py diff --git a/r2e/models/fut.py b/src/r2e/models/fut.py similarity index 100% rename from r2e/models/fut.py rename to src/r2e/models/fut.py diff --git a/r2e/models/identifier.py b/src/r2e/models/identifier.py similarity index 100% rename from r2e/models/identifier.py rename to src/r2e/models/identifier.py diff --git a/r2e/models/method.py b/src/r2e/models/method.py similarity index 100% rename from r2e/models/method.py rename to src/r2e/models/method.py diff --git a/r2e/models/module.py b/src/r2e/models/module.py similarity index 100% rename from r2e/models/module.py rename to src/r2e/models/module.py diff --git a/r2e/models/repo.py b/src/r2e/models/repo.py similarity index 100% rename from r2e/models/repo.py rename to src/r2e/models/repo.py diff --git a/r2e/models/tests.py b/src/r2e/models/tests.py similarity index 94% rename from r2e/models/tests.py rename to src/r2e/models/tests.py index 5b1797f..e3cd102 100644 --- a/r2e/models/tests.py +++ b/src/r2e/models/tests.py @@ -85,6 +85,11 @@ def latest_errors(self) -> str: return "\n".join(last_errors) + @property + def latest_chat_messages(self) -> list[dict[str, str]]: + """Returns the chat messages of the latest test run""" + return self.history[-1].chat_messages + @property def is_passing(self) -> bool: """Returns True if the latest tests are passing""" diff --git a/r2e/multiprocess.py b/src/r2e/multiprocess.py similarity index 100% rename from r2e/multiprocess.py rename to src/r2e/multiprocess.py diff --git a/r2e/pat/README.md b/src/r2e/pat/README.md similarity index 100% rename from r2e/pat/README.md rename to src/r2e/pat/README.md diff --git a/r2e/pat/__init__.py b/src/r2e/pat/__init__.py similarity index 100% rename from r2e/pat/__init__.py rename to src/r2e/pat/__init__.py diff --git a/r2e/pat/ast/__init__.py b/src/r2e/pat/ast/__init__.py similarity index 100% rename from r2e/pat/ast/__init__.py rename to src/r2e/pat/ast/__init__.py diff --git a/r2e/pat/ast/augmenter.py b/src/r2e/pat/ast/augmenter.py similarity index 100% rename from r2e/pat/ast/augmenter.py rename to src/r2e/pat/ast/augmenter.py diff --git a/r2e/pat/ast/explorer.py b/src/r2e/pat/ast/explorer.py similarity index 100% rename from r2e/pat/ast/explorer.py rename to src/r2e/pat/ast/explorer.py diff --git a/r2e/pat/ast/transformer.py b/src/r2e/pat/ast/transformer.py similarity index 100% rename from r2e/pat/ast/transformer.py rename to src/r2e/pat/ast/transformer.py diff --git a/r2e/pat/ast/unparser.py b/src/r2e/pat/ast/unparser.py similarity index 100% rename from r2e/pat/ast/unparser.py rename to src/r2e/pat/ast/unparser.py diff --git a/r2e/pat/callgraph/__init__.py b/src/r2e/pat/callgraph/__init__.py similarity index 100% rename from r2e/pat/callgraph/__init__.py rename to src/r2e/pat/callgraph/__init__.py diff --git a/r2e/pat/callgraph/explorer.py b/src/r2e/pat/callgraph/explorer.py similarity index 100% rename from r2e/pat/callgraph/explorer.py rename to src/r2e/pat/callgraph/explorer.py diff --git a/r2e/pat/callgraph/generator.py b/src/r2e/pat/callgraph/generator.py similarity index 100% rename from r2e/pat/callgraph/generator.py rename to src/r2e/pat/callgraph/generator.py diff --git a/r2e/pat/callgraph/processor.py b/src/r2e/pat/callgraph/processor.py similarity index 100% rename from r2e/pat/callgraph/processor.py rename to src/r2e/pat/callgraph/processor.py diff --git a/r2e/pat/dependency_slicer/__init__.py b/src/r2e/pat/dependency_slicer/__init__.py similarity index 100% rename from r2e/pat/dependency_slicer/__init__.py rename to src/r2e/pat/dependency_slicer/__init__.py diff --git a/r2e/pat/dependency_slicer/ast_statements.py b/src/r2e/pat/dependency_slicer/ast_statements.py similarity index 100% rename from r2e/pat/dependency_slicer/ast_statements.py rename to src/r2e/pat/dependency_slicer/ast_statements.py diff --git a/r2e/pat/dependency_slicer/dependency_graph.py b/src/r2e/pat/dependency_slicer/dependency_graph.py similarity index 100% rename from r2e/pat/dependency_slicer/dependency_graph.py rename to src/r2e/pat/dependency_slicer/dependency_graph.py diff --git a/r2e/pat/dependency_slicer/globals_finder/__init__.py b/src/r2e/pat/dependency_slicer/globals_finder/__init__.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/__init__.py rename to src/r2e/pat/dependency_slicer/globals_finder/__init__.py diff --git a/r2e/pat/dependency_slicer/globals_finder/bytecode_globals.py b/src/r2e/pat/dependency_slicer/globals_finder/bytecode_globals.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/bytecode_globals.py rename to src/r2e/pat/dependency_slicer/globals_finder/bytecode_globals.py diff --git a/r2e/pat/dependency_slicer/globals_finder/decorator_globals.py b/src/r2e/pat/dependency_slicer/globals_finder/decorator_globals.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/decorator_globals.py rename to src/r2e/pat/dependency_slicer/globals_finder/decorator_globals.py diff --git a/r2e/pat/dependency_slicer/globals_finder/defaultarg_globals.py b/src/r2e/pat/dependency_slicer/globals_finder/defaultarg_globals.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/defaultarg_globals.py rename to src/r2e/pat/dependency_slicer/globals_finder/defaultarg_globals.py diff --git a/r2e/pat/dependency_slicer/globals_finder/expr_globals.py b/src/r2e/pat/dependency_slicer/globals_finder/expr_globals.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/expr_globals.py rename to src/r2e/pat/dependency_slicer/globals_finder/expr_globals.py diff --git a/r2e/pat/dependency_slicer/globals_finder/globals_finder.py b/src/r2e/pat/dependency_slicer/globals_finder/globals_finder.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/globals_finder.py rename to src/r2e/pat/dependency_slicer/globals_finder/globals_finder.py diff --git a/r2e/pat/dependency_slicer/globals_finder/stmt_globals.py b/src/r2e/pat/dependency_slicer/globals_finder/stmt_globals.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/stmt_globals.py rename to src/r2e/pat/dependency_slicer/globals_finder/stmt_globals.py diff --git a/r2e/pat/dependency_slicer/globals_finder/type_annotation_globals.py b/src/r2e/pat/dependency_slicer/globals_finder/type_annotation_globals.py similarity index 100% rename from r2e/pat/dependency_slicer/globals_finder/type_annotation_globals.py rename to src/r2e/pat/dependency_slicer/globals_finder/type_annotation_globals.py diff --git a/r2e/pat/dependency_slicer/handlers/__init__.py b/src/r2e/pat/dependency_slicer/handlers/__init__.py similarity index 100% rename from r2e/pat/dependency_slicer/handlers/__init__.py rename to src/r2e/pat/dependency_slicer/handlers/__init__.py diff --git a/r2e/pat/dependency_slicer/handlers/base_handler.py b/src/r2e/pat/dependency_slicer/handlers/base_handler.py similarity index 100% rename from r2e/pat/dependency_slicer/handlers/base_handler.py rename to src/r2e/pat/dependency_slicer/handlers/base_handler.py diff --git a/r2e/pat/dependency_slicer/handlers/classfunction_handler.py b/src/r2e/pat/dependency_slicer/handlers/classfunction_handler.py similarity index 100% rename from r2e/pat/dependency_slicer/handlers/classfunction_handler.py rename to src/r2e/pat/dependency_slicer/handlers/classfunction_handler.py diff --git a/r2e/pat/dependency_slicer/handlers/import_handler.py b/src/r2e/pat/dependency_slicer/handlers/import_handler.py similarity index 100% rename from r2e/pat/dependency_slicer/handlers/import_handler.py rename to src/r2e/pat/dependency_slicer/handlers/import_handler.py diff --git a/r2e/pat/dependency_slicer/slicer_main.py b/src/r2e/pat/dependency_slicer/slicer_main.py similarity index 100% rename from r2e/pat/dependency_slicer/slicer_main.py rename to src/r2e/pat/dependency_slicer/slicer_main.py diff --git a/r2e/pat/imports/__init__.py b/src/r2e/pat/imports/__init__.py similarity index 100% rename from r2e/pat/imports/__init__.py rename to src/r2e/pat/imports/__init__.py diff --git a/r2e/pat/imports/resolver.py b/src/r2e/pat/imports/resolver.py similarity index 100% rename from r2e/pat/imports/resolver.py rename to src/r2e/pat/imports/resolver.py diff --git a/r2e/pat/imports/transformer.py b/src/r2e/pat/imports/transformer.py similarity index 100% rename from r2e/pat/imports/transformer.py rename to src/r2e/pat/imports/transformer.py diff --git a/r2e/pat/instrument/__init__.py b/src/r2e/pat/instrument/__init__.py similarity index 100% rename from r2e/pat/instrument/__init__.py rename to src/r2e/pat/instrument/__init__.py diff --git a/r2e/pat/instrument/arguments.py b/src/r2e/pat/instrument/arguments.py similarity index 100% rename from r2e/pat/instrument/arguments.py rename to src/r2e/pat/instrument/arguments.py diff --git a/r2e/pat/instrument/base.py b/src/r2e/pat/instrument/base.py similarity index 100% rename from r2e/pat/instrument/base.py rename to src/r2e/pat/instrument/base.py diff --git a/r2e/pat/modules/__init__.py b/src/r2e/pat/modules/__init__.py similarity index 100% rename from r2e/pat/modules/__init__.py rename to src/r2e/pat/modules/__init__.py diff --git a/r2e/pat/modules/explorer.py b/src/r2e/pat/modules/explorer.py similarity index 100% rename from r2e/pat/modules/explorer.py rename to src/r2e/pat/modules/explorer.py diff --git a/r2e/paths.py b/src/r2e/paths.py similarity index 100% rename from r2e/paths.py rename to src/r2e/paths.py diff --git a/r2e/repo_builder/README.md b/src/r2e/repo_builder/README.md similarity index 100% rename from r2e/repo_builder/README.md rename to src/r2e/repo_builder/README.md diff --git a/r2e/repo_builder/__init__.py b/src/r2e/repo_builder/__init__.py similarity index 100% rename from r2e/repo_builder/__init__.py rename to src/r2e/repo_builder/__init__.py diff --git a/r2e/repo_builder/docker_builder/__init__.py b/src/r2e/repo_builder/docker_builder/__init__.py similarity index 100% rename from r2e/repo_builder/docker_builder/__init__.py rename to src/r2e/repo_builder/docker_builder/__init__.py diff --git a/r2e/repo_builder/docker_builder/r2e_base_dockerfile.txt b/src/r2e/repo_builder/docker_builder/r2e_base_dockerfile.txt similarity index 100% rename from r2e/repo_builder/docker_builder/r2e_base_dockerfile.txt rename to src/r2e/repo_builder/docker_builder/r2e_base_dockerfile.txt diff --git a/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py b/src/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py similarity index 91% rename from r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py rename to src/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py index e3418b8..e22e726 100644 --- a/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py +++ b/src/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py @@ -8,7 +8,7 @@ def generate_dockerfile(repo_args: RepoArgs): - with open("r2e/repo_builder/docker_builder/r2e_base_dockerfile.txt", "r") as f: + with open("src/r2e/repo_builder/docker_builder/r2e_base_dockerfile.txt", "r") as f: dockerfile = f.read() num_repos = len(os.listdir(REPOS_DIR)) diff --git a/r2e/repo_builder/extract_func_methods.py b/src/r2e/repo_builder/extract_func_methods.py similarity index 100% rename from r2e/repo_builder/extract_func_methods.py rename to src/r2e/repo_builder/extract_func_methods.py diff --git a/r2e/repo_builder/fut_extractor/__init__.py b/src/r2e/repo_builder/fut_extractor/__init__.py similarity index 100% rename from r2e/repo_builder/fut_extractor/__init__.py rename to src/r2e/repo_builder/fut_extractor/__init__.py diff --git a/r2e/repo_builder/fut_extractor/extract_base.py b/src/r2e/repo_builder/fut_extractor/extract_base.py similarity index 100% rename from r2e/repo_builder/fut_extractor/extract_base.py rename to src/r2e/repo_builder/fut_extractor/extract_base.py diff --git a/r2e/repo_builder/fut_extractor/extract_functions.py b/src/r2e/repo_builder/fut_extractor/extract_functions.py similarity index 100% rename from r2e/repo_builder/fut_extractor/extract_functions.py rename to src/r2e/repo_builder/fut_extractor/extract_functions.py diff --git a/r2e/repo_builder/fut_extractor/extract_methods.py b/src/r2e/repo_builder/fut_extractor/extract_methods.py similarity index 100% rename from r2e/repo_builder/fut_extractor/extract_methods.py rename to src/r2e/repo_builder/fut_extractor/extract_methods.py diff --git a/r2e/repo_builder/fut_extractor/extract_repo_data.py b/src/r2e/repo_builder/fut_extractor/extract_repo_data.py similarity index 100% rename from r2e/repo_builder/fut_extractor/extract_repo_data.py rename to src/r2e/repo_builder/fut_extractor/extract_repo_data.py diff --git a/r2e/repo_builder/repo_args.py b/src/r2e/repo_builder/repo_args.py similarity index 100% rename from r2e/repo_builder/repo_args.py rename to src/r2e/repo_builder/repo_args.py diff --git a/r2e/repo_builder/run_pycg.py b/src/r2e/repo_builder/run_pycg.py similarity index 100% rename from r2e/repo_builder/run_pycg.py rename to src/r2e/repo_builder/run_pycg.py diff --git a/r2e/repo_builder/setup_repos.py b/src/r2e/repo_builder/setup_repos.py similarity index 98% rename from r2e/repo_builder/setup_repos.py rename to src/r2e/repo_builder/setup_repos.py index a1dac96..c0bba27 100644 --- a/r2e/repo_builder/setup_repos.py +++ b/src/r2e/repo_builder/setup_repos.py @@ -45,7 +45,8 @@ def clone_and_setup_repos(repo_args: RepoArgs): ), f"Expected list of strings, got {repo_urls}" SetupRepos.clone_repos_from_urls(repo_urls, repo_args.cloning_multiprocess) - run_pycg(repo_args) + if repo_args.run_pycg: + run_pycg(repo_args) @staticmethod def clone_repo_from_url(repo_url: str): diff --git a/r2e/utils/__init__.py b/src/r2e/utils/__init__.py similarity index 100% rename from r2e/utils/__init__.py rename to src/r2e/utils/__init__.py diff --git a/r2e/utils/data.py b/src/r2e/utils/data.py similarity index 100% rename from r2e/utils/data.py rename to src/r2e/utils/data.py diff --git a/r2e/utils/models.py b/src/r2e/utils/models.py similarity index 100% rename from r2e/utils/models.py rename to src/r2e/utils/models.py diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..d832186 --- /dev/null +++ b/uv.lock @@ -0,0 +1,3725 @@ +version = 1 +requires-python = ">=3.11" +resolution-markers = [ + "python_full_version < '3.12'", + "python_full_version == '3.12.*'", + "python_full_version >= '3.13'", +] + +[[package]] +name = "aiohappyeyeballs" +version = "2.4.3" 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feat(cli): r2e cli and docs --- README.md | 272 ++++++++++++----------------- docs/CLI.md | 157 +++++++++++++++++ docs/gendocs.py | 34 ++++ src/r2e/cli.py | 441 ++++++++++++++++++++++++++++++++++++++++++++++++ 4 files changed, 742 insertions(+), 162 deletions(-) create mode 100644 docs/CLI.md create mode 100644 docs/gendocs.py create mode 100644 src/r2e/cli.py diff --git a/README.md b/README.md index 074d78b..fa2e0c9 100644 --- a/README.md +++ b/README.md @@ -5,215 +5,163 @@

-

- 🌐 Website & Demos  |   - 📄 Paper @ ICML 2024  |   - 🤗 Datasets (coming soon!)  -

- ---- - +
-## Overview + [![Website](https://img.shields.io/badge/website-r2e.dev-blue)](https://r2e.dev) + [![Paper](https://img.shields.io/badge/paper-ICML%202024-purple)](https://r2e.dev/pdfs/paper.pdf) + [![Demos](https://img.shields.io/badge/youtube-demos-maroon)](https://www.youtube.com/watch?v=NrTEbwyofAg&list=PLA_lMIaJefMZyZOac67rxwRSjmE8rNZ9v) + [![GitHub license](https://img.shields.io/badge/License-MIT-blu.svg)](https://lbesson.mit-license.org/) +
-This is the code for the [R2E framework](https://r2e.dev). -Building a scalable and interactive testbed for evaluating general-purpose AI programming agents -for real-world code has been challenging, particularly due to a lack of high-quality test suites -available. +--- -R2E turns *any* GitHub repository into an executable environment for evaluating static code generation models and programming agents at scale. -It extracts functions and methods from the repository, generates **equivalence tests** for them, and executes these tests in a Docker container. -The generated tests and corresponding environments are used to evaluate the quality of the code generated by the programming agents. +[R2E](https://r2e.dev) (Repository to Environment) is a framework that turns *any* GitHub repository into an executable environment for evaluating static code generation models and programming agents at scale. It extracts functions and methods from the repository, generates and executes **equivalence tests** for them using LLMs, and creates an interactive execution environment. These environments can be used to evaluate the quality of LLM generated code. -![alt text](./assets/images/overview.png) ## Installation -You can clone the repository using the following command. We recommend `poetry` for managing dependencies. You can also use a standard `pip install -e .` to install the package. -```bash -git clone https://github.com/r2e-project/r2e.git -cd r2e -pip install poetry -poetry install +1. Install [`uv`](https://docs.astral.sh/uv/) to setup R2E. +```posh +curl -LsSf https://astral.sh/uv/install.sh | sh ``` -## Converting Repositories to Environments - -You can use R2E to convert GitHub repositories into environments for programming agents. First, R2E builds and installs the repository in a Docker image. Then, we extract the functions and methods from the repository and generate -**Equivalence Tests** for them. - -These tests are then executed in the Docker container using R2E's custom testing framework [R2E Test Server](https://github.com/r2e-project/r2e-test-server). This server provides an interface for agents to interact with the built environment and execute arbitrary code. Here are these steps in more detail: - -> [!Tip] -> -> Configure your paths in the [config.yml](./r2e/config.yml) file. These paths will define where your repositories are located and generated data is stored. - - -### 1. Setup and Extract Functions - -#### 1.1 Clone and Setup Repositories -Relevant Code: [SetupRepos](./r2e/repo_builder/setup_repos.py) - -R2E first clones and sets up repositories locally. It supports cloning from a URL, copying from a local path, or processing a list of URLs or local paths. -```bash -python r2e/repo_builder/setup_repos.py - --repo_url - --local_repo_path - --repo_urls_file - --cloning_multiprocess +2. Create a venv, clone, and install. +```posh +git clone https://github.com/r2e-project/r2e.git +cd r2e && uv venv && source .venv/bin/activate +uv sync ``` -Replace: -- with the URL of the repository you want to clone. -- with the local path of the repository you want to copy. -- with the path to a JSON file containing a list of repository URLs or local paths. -- with the number of processes you want to use for cloning or copying. - -> [!Note] -> -> You only need to provide one of repo_url, local_repo_path, or repo_paths_urls_file. After cloning or copying the repositories, the script will run [PyCG](https://arxiv.org/abs/2103.00587) to generate callgraphs for the repositories. - -#### 1.2 Extract Functions and Methods -Relevant Code: [extract_func_methods.py](./r2e/repo_builder/extract_func_methods.py) - -With the repos and callgraphs in place, we can now extract the functions and methods: +## Key Concept: Equivalence Test Harnesses -```bash -python r2e/repo_builder/extract_func_methods.py - --exp_id - --overwrite_extracted - --extraction_multiprocess -``` +R2E introduces **Equivalence Tests**, a test that checks if two pieces of code are equivalent. In the context of R2E, an **Equivalence Test** checks if the output of a function/method in a repository is the same as the output of the generated code for the same function/method. Here's an overview of the key principles of R2E: -Replace: -- with your experiment ID. -- with True if you want to overwrite the existing extracted data, False otherwise. -- with the number of processes you want to use for extraction. +| **Principle** | **Description** | +|---------------|-----------------| +| **Equivalence Tests** | R2E generates tests that use the ground truth implementation to check equivalence, avoiding predicting test outputs.| +| **Complete Harness** | Generates harnesses with complete setup info (e.g., files, DB connections) instead of simple I/O examples. | +| **Sliced Context** | Leverages dependency slicing to provide minimal, relevant context, for test generation. | +| **Coverage** | Filters incorrect tests and assesses test quality using branch coverage.| -> [!Note] -> -> The script will find all directories in the REPOS_DIR directory (where your repos were cloned), and extract functions and methods from them. The extracted functions and methods are written to a JSON file in the EXTRACTION_DIR directory. If the extraction file already exists, the script will not overwrite it unless you set --overwrite_extracted to True. +Find more details and examples at [r2e.dev](https://r2e.dev) and in our [paper](https://r2e.dev/pdfs/paper.pdf). +## Usage +R2E provides a convenient CLI to work with. The usual steps are as follows: +(1) [setup and extract functions from repositories](#1-setup-and-extract), +(2) [build and install repositories](#2-build-and-install), and +(3) [generate and execute **Equivalence Tests**](#3-generate-and-execute-tests) -### 2. Build Repositories +Find the complete CLI documentation at [CLI.md](./docs/CLI.md). Below is a quickstart guide: -#### 2.1 Generate Dockerfile -Relevant Code: [r2e_dockerfile_builder.py](./r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py) -R2E builds and installs the repositories in a Docker image. This image is used to execute the generated tests in the next step. We first generate a dockerfile and then build the image. +### 1. Setup and Extract -```bash -python r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py - --install_batch_size +First, choose a unique experiment id (e.g., `quickstart`) that you can reuse for the entire workflow. Then setup repositories and extract functions from: +```posh +r2e setup -r https://github.com/google-research/python-graphs +r2e extract -e quickstart --overwrite_extracted ``` +
+Output -Replace: -- with the batch size for installing the repositories in parallel in the Docker image. +``` +Cloning repository https://github.com/google-research/python-graphs +Repo Location: /home/user/buckets/local_repoeval_bucket/repos/ +Setup completed successfully. -> [!Note] -> -> The dockerfile will copy all the directories in the REPOS_DIR directory (where your repos were cloned) to the Docker image. It will then install the repositories using a combination of [`pdm`](pdm-project.org) and `pip` install commands. The Docker image is stored in the [docker_builder](./r2e/repo_builder/docker_builder) directory. +Result: /home/user/buckets/local_repoeval_bucket/repos -#### 2.2 Build Docker Image -Once the dockerfile is generated, we can build the Docker image using the following command: +Extracting..: 100%|███████████████████████| 2/2 [00:00<00:00, 8.89it/s] +Extracted 18 functions and 53 methods +Extraction completed successfully. -```bash -docker build -t r2e: -f . +Result: /home/user/buckets/r2e_bucket/extracted_data/quickstart_extracted.json ``` - -Replace: -- with your experiment ID for the docker name. -- with the path to the generated dockerfile [docker_builder](./r2e/repo_builder/docker_builder) +
> [!Note] +> We also support copying from a local path, or processing a list of URLs/local paths from a json file ([cli docs](./docs/CLI.md)). > -> Since we COPY all the directories in the REPOS_DIR directory to the Docker image, the docker build command needs to be run from REPOS_DIR. You can change this behavior by modifying Line 27 of the generated docker file. +> During extraction all repos cloned into REPOS_DIR are processed. The extracted functions and methods are written to a JSON file. Use `--overwrite_extracted` to overwrite any existing results. -> [!Tip] -> -> Please follow [http://docs.docker.com/engine/install/](http://docs.docker.com/engine/install/) for instructions on installing docker. It is recommended to follow the post-installation steps to run docker as a non-root user. -### 3. Generate Equivalence Test Harnesses +### 2. Build and Install -#### 3.1 Generation +**Docker Mode:** By default, all repos in REPOS_DIR are installed in a Docker image for sandboxed execution. Find the generated dockerfile in REPOS_DIR. Useful reference: [install docker](http://docs.docker.com/engine/install/) -Relevant Code: [R2ETestGenerator](./r2e/generators/testgen/generate.py) +**Local Mode:** Use `--local` which will suggest the steps ***you need to take to manually*** to install repos. -```bash -python r2e/generators/testgen/generate.py - -i - --exp_id - --multiprocess - --cache_batch_size +```posh +r2e build -e quickstart ``` -> [!Note] -> -> This generates the **equivalence tests** for the functions/methods in the input JSON file. R2E generates the tests using a combination of static analysis and prompting language models. Several other args are available to control the generation process and language model in [testgen/args.py](./r2e/generators/testgen/args.py). - - -#### 3.2 Execution +
+Output -Relevant Code: [execute.py](./r2e/execution/execute.py) - -```bash -python r2e/execution/execute.py - -i - --exp_id - --execution_multiprocess - --timeout_per_task - --image_name r2e: ``` - -Replace: -- with the path to the JSON file containing the generated tests. -- with the experiment ID of the previous test generation step. -- with the number of processes you want to use for execution. -- with the timeout for each test execution. -- with the name of the Docker image you built in the previous step. - -> [!Note] -> -> The script will execute the generated tests in the Docker container. The results are stored in the [EXECUTION_DIR] directory. - - -#### 3.3 Evaluation - -Relevant Code: [TestGenEvaluator](./r2e/evaluators/testgen.py) - -```bash -python r2e/evaluators/testgen.py +Found 1 repositories in the repos directory. +Running in Docker mode. +Creating a dockerfile... +Dockerfile generated at: /local_repoeval_bucket/repos/r2e_final_dockerfile.dockerfile +... + +[+] Building 553.2s (16/16) FINISHED docker:default + => [internal] load build definition from r2e_final_dockerfile.dockerfile 0.0s + => => transferring dockerfile: 2.52kB 0.0s + ... + => exporting to image 31.0s + => => exporting layers 30.9s + => => writing image sha256:28d6f5751dfac6de9ccd883f0830cf8ac5c88e46df8bd7 0.0s + => => naming to docker.io/library/r2e:quickstart 0.0s + +$ docker image ls +REPOSITORY TAG IMAGE ID CREATED SIZE +r2e quickstart 28d6f5751dfa 4 minutes ago 10.1GB ``` +
-> [!Note] -> This would give you a summary of the generated tests and their execution results. The evaluator also provides a detailed breakdown of the execution results for each test. -#### 3.4 Filtering and Oversampling Tests +### 3. Generate and Execute Tests -Relevant Code: [R2ETestGenerator.filter](./r2e/generators/testgen/generate.py) | [R2ETestOversample](./r2e/generators/testgen/oversample.py) +R2E provides a single command that runs a series of `k` generate-execute rounds w/ feedback. The loop continues until `min_valid`% functions reach a `min_cov`% branch coverage. Defaults: `k=3`, `min_valid=0.8`, and `min_cov=0.8`. -One can easily filter out invalid tests after execution, by updating \_\_main\_\_ in [generate.py](./r2e/generators/testgen/generate.py): -```diff -if __name__ == "__main__": - args = fire.Fire(TestGenArgs) +```posh +r2e genexec -e quickstart --save_chat +``` +
+Output -- R2ETestGenerator.generate(args) -+ R2ETestGenerator.filter(args) ``` +Generating contexts: 100%|███████████████████████| 10/10 [00:03<00:00, 20.56it/s] + +Starting round 1/3 +100%|███████████████████████| 10/10 [00:13<00:00, 1.36s/it] +Loaded 10 functions under test +100%|███████████████████████| 10/10 [00:01<00:00, 5.74it/s] +Round 1 completed. Status: 0.20 good FUTs. + +Starting round 2/3 +100%|███████████████████████| 8/8 [00:20<00:00, 2.58s/it] +Loaded 8 functions under test +100%|███████████████████████| 8/8 [00:01<00:00, 4.66it/s] +Round 2 completed. Status: 0.60 good FUTs. + +Starting round 3/3 +100%|███████████████████████| 4/4 [00:13<00:00, 3.39s/it] +Loaded 4 functions under test +100%|███████████████████████| 4/4 [00:01<00:00, 2.41it/s] +Reached max rounds. Stopping at round 3 + +Result: /home/user/buckets/r2e_bucket/execution/quickstart_out.json +``` +
> [!Note] -> Invalid tests are those that did not pass on execution in the previous step. Tests can fail either due to environmental reasons or -> syntax/semantic issues in the generated test itself. - -Furthermore, one can also oversample additional tests, given some passing ones (say to improve coverage for a function): -```bash -python r2e/generators/testgen/oversample.py - -i - --exp_id - --multiprocess - --cache_batch_size -``` +> You can also run `r2e generate` and `r2e execute` separately ([cli docs](./docs/CLI.md)). +> +> The generated tests are executed in the Docker container. Use `--local` to execute locally. + ## Additional Resources diff --git a/docs/CLI.md b/docs/CLI.md new file mode 100644 index 0000000..2e5af38 --- /dev/null +++ b/docs/CLI.md @@ -0,0 +1,157 @@ +# R2E CLI Documentation + +## Summary: + +- [r2e setup](#r2e-setup): Set up the environment and clone repositories. +- [r2e build](#r2e-build): Build a Docker image for your experiment. +- [r2e extract](#r2e-extract): Extract functions and methods from repositories. +- [r2e generate](#r2e-generate): Generate equivalence tests for the extracted functions. +- [r2e execute](#r2e-execute): Execute the generated equivalence tests. +- [r2e genexec](#r2e-genexec): Generate-and-Execute Agent that iteratively generates and executes tests. +- [r2e list-functions](#r2e-list-functions): List the extracted functions and methods. +- [r2e show](#r2e-show): Show detailed information about a specific function. + +## `r2e setup` + +Set up the environment and clone repositories. + +### Options: + +- `--repo_url`: URL of the repository to build +- `--local_repo_path`: Path to the local repository +- `--repo_paths_file`: Path to a json file containing a list of local paths +- `--repo_urls_file`: Path to a json file containing a list of URLs +- `--cloning_multiprocess`: Number of processes to use for cloning the repositories (default: 16) +- `--run_pycg`: Whether to run PyCG on the repositories +- `--pycg_timeout`: Timeout for PyCG in minutes (default: 5) +- `--pycg_multiprocess`: Number of processes to use for running PyCG (default: 16) + +## `r2e build` + +Build a Docker image for your experiment. + +### Options: + +- `--exp_id`: Experiment ID used for identifying the Docker image (default: temp) +- `--local`: Whether to run the build locally. Default is building a Docker image. +- `--install_batch_size`: Number of repositories to install in parallel in the Docker container. (default: 10) + +## `r2e extract` + +Extract functions and methods from repositories. + +### Options: + +- `--exp_id`: Experiment ID used for prefixing the extracted functions and methods (default: temp) +- `--overwrite_extracted`: Whether to overwrite the extracted functions and methods +- `--extraction_multiprocess`: Number of processes to use for extracting functions and methods (default: 16) +- `--disable_dunder_methods`: Disable dunder method filter +- `--disable_no_docstring`: Disable functions w/o docstring filter +- `--disable_signature_filters`: Disable function signature filters (args, returns) +- `--disable_keyword_filters`: Disable keyword filters (docstring, body, name) +- `--disable_wrapper_filters`: Disable filters for wrappers (decorators, etc.) +- `--disable_lines_filter`: Disable lines filter +- `--disable_all_filters`: Disable all filters + +## `r2e generate` + +Generate equivalence tests for the extracted functions. + +### Options: + +- `--exp_id`: Experiment ID used for prefixing the generated tests file (default: temp) +- `--function`: Name of the function to show. +- `--in_file`: The input file for the test generator. Defaults to {exp_id}_extracted.json if not provided. +- `--context_type`: The context type to use for the language model (default: sliced) +- `--oversample_rounds`: The number of rounds to oversample (default: 1) +- `--max_context_size`: The maximum context size (default: 6000) +- `--save_chat`: Whether to save the chat messages +- `--multiprocess`: The number of processes to use for multiprocessing (default: 8) +- `--model_name`: The model name to use for the language model (default: gpt-4-turbo-2024-04-09) +- `--n`: The number of completions to generate (default: 1) +- `--top_p`: The nucleus sampling probability (default: 0.95) +- `--max_tokens`: The maximum number of tokens to generate (default: 1024) +- `--temperature`: The temperature for the LLM request (default: 0.2) +- `--presence_penalty`: The presence penalty for the LLM request +- `--frequency_penalty`: The frequency penalty for the LLM request +- `--stop`: The stop sequence for the LLM request +- `--openai_timeout`: The timeout for the OpenAI API request (default: 60) +- `--use_cache`: Whether to use the cache for LLM queries. Default is True. (default: True) +- `--cache_batch_size`: The batch size for cache writes. (default: 30) + +## `r2e execute` + +Execute the generated equivalence tests. + +### Options: + +- `--exp_id`: The experiment ID used for the test execution (default: temp) +- `--function`: Name of the function to show. +- `--in_file`: The input file for the test execution +- `--local`: Whether to run the execution service locally. Default is docker. +- `--image`: The name of the docker image in which to run the tests (default: r2e:temp) +- `--execution_multiprocess`: The number of processes to use for executing the functions and methods (default: 20) +- `--port`: The port to use for the execution service. Default is 3006 for sequential execution. For parallel, port is randomly picked. (default: 3006) +- `--timeout_per_task`: The timeout for the execution service to complete one task in seconds (default: 180) +- `--batch_size`: The number of functions to run before writing the output to the file (default: 100) + +## `r2e genexec` + +Generate-and-Execute Agent that iteratively generates and executes tests. + +### Options: + +- `--exp_id`: The experiment ID used for the test execution (default: temp) +- `--function`: Name of the function to show. +- `--in_file`: The input file for the genexec agent. +- `--max_rounds`: The maximum number of rounds to run the genexec process (default: 3) +- `--min_cov`: The minimum branch coverage to consider a test valid (default: 0.8) +- `--min_valid`: The minimum percentage of valid problems to achieve in the dataset (default: 0.8) +- `--context_type`: The context type to use for the language model (default: sliced) +- `--oversample_rounds`: The number of rounds to oversample (default: 1) +- `--max_context_size`: The maximum context size (default: 6000) +- `--save_chat`: Whether to save the chat messages +- `--multiprocess`: The number of processes to use for multiprocessing (default: 8) +- `--model_name`: The model name to use for the language model (default: gpt-4-turbo-2024-04-09) +- `--n`: The number of completions to generate (default: 1) +- `--top_p`: The nucleus sampling probability (default: 0.95) +- `--max_tokens`: The maximum number of tokens to generate (default: 1024) +- `--temperature`: The temperature for the LLM request (default: 0.2) +- `--presence_penalty`: The presence penalty for the LLM request +- `--frequency_penalty`: The frequency penalty for the LLM request +- `--stop`: The stop sequence for the LLM request +- `--openai_timeout`: The timeout for the OpenAI API request (default: 60) +- `--use_cache`: Whether to use the cache for LLM queries. Default is True. (default: True) +- `--cache_batch_size`: The batch size for cache writes. (default: 30) +- `--local`: Whether to run the execution service locally. Default is docker. +- `--image`: The name of the docker image in which to run the tests (default: r2e:temp) +- `--execution_multiprocess`: The number of processes to use for executing the functions and methods (default: 20) +- `--port`: The port to use for the execution service. Default is 3006 for sequential execution. For parallel, port is randomly picked. (default: 3006) +- `--timeout_per_task`: The timeout for the execution service to complete one task in seconds (default: 180) +- `--batch_size`: The number of functions to run before writing the output to the file (default: 100) + +## `r2e list-functions` + +List the extracted functions and methods. + +### Options: + +- `--exp_id`: Experiment ID used for prefixing the extracted functions file (default: temp) +- `--limit`: The maximum number of functions to list (default: 10) +- `--detailed`: Show detailed information for each function + +## `r2e show` + +Show detailed information about a specific function. + +### Options: + +- `--exp_id`: Experiment ID used for prefixing the extracted functions file (default: temp) +- `--fname`: Name of the function to show. +- `--code`: Show the code of the function. +- `--test`: Show the generated test for the function. +- `--result`: Show the generated test for the function. +- `--show_all`: Show (code, test, result) for function(s). +- `--chat`: Show the chat messages leading up to the final test for a function. +- `--summary`: Show an overall summary of the test execution results. + diff --git a/docs/gendocs.py b/docs/gendocs.py new file mode 100644 index 0000000..6386ce1 --- /dev/null +++ b/docs/gendocs.py @@ -0,0 +1,34 @@ +import click +from r2e.cli import r2e # Import your main CLI group + + +def generate_docs(): + output = "# R2E CLI Documentation\n\n" + + # Generate Table of Contents + output += "## Summary:\n\n" + for command in r2e.commands.values(): + output += ( + f"- [r2e {command.name}](#r2e-{command.name.lower()}): {command.help}\n" + ) + output += "\n" + + for command in r2e.commands.values(): + output += f"## `r2e {command.name}`\n\n" + output += f"{command.help}\n\n" + output += "### Options:\n\n" + + for param in command.params: + output += f"- `--{param.name}`: {param.help}" + if param.default: + output += f" (default: {param.default})" + output += "\n" + + output += "\n" + + with open("./docs/CLI.md", "w") as f: + f.write(output) + + +if __name__ == "__main__": + generate_docs() diff --git a/src/r2e/cli.py b/src/r2e/cli.py new file mode 100644 index 0000000..9692d04 --- /dev/null +++ b/src/r2e/cli.py @@ -0,0 +1,441 @@ +# fmt: off +import os +import click +import ast +import json +import textwrap +import subprocess + +from r2e.repo_builder import RepoArgs, SetupRepos, build_functions_and_methods, generate_dockerfile +from r2e.generators.testgen import TestGenArgs, R2ETestGenerator, GenExecArgs, R2EGenExec +from r2e.execution.args import ExecutionArgs +from r2e.execution.execute import EquivalenceTestRunner +from r2e.evaluators.testgen import summarize + +from r2e.utils.data import load_functions, load_functions_under_test +from r2e.models import * + +from r2e.paths import REPOS_DIR, EXTRACTED_DATA_DIR, TESTGEN_DIR, EXECUTION_DIR + +@click.group() +def r2e(): + """R2E CLI tool.""" + pass + +def show_result_file(file_path): + click.secho(f"\nResult: {file_path}", fg="green", bold=True) + +################### r2e setup ################### + +@r2e.command() +@click.option('--repo_url', '-r', help="URL of the repository to build") +@click.option('--local_repo_path', '-l', help="Path to the local repository") +@click.option('--repo_paths_file', '-p', help="Path to a json file containing a list of local paths") +@click.option('--repo_urls_file', '-u', help="Path to a json file containing a list of URLs") +@click.option('--cloning_multiprocess', '-m', default=16, type=int, help="Number of processes to use for cloning the repositories") +@click.option('--run_pycg', is_flag=True, help="Whether to run PyCG on the repositories") +@click.option('--pycg_timeout', default=5, type=int, help="Timeout for PyCG in minutes") +@click.option('--pycg_multiprocess', default=16, type=int, help="Number of processes to use for running PyCG") +def setup(**kwargs): + """Set up the environment and clone repositories.""" + SetupRepos.clone_and_setup_repos(RepoArgs(**kwargs)) + click.echo("Setup completed successfully.") + show_result_file(REPOS_DIR) + + +################### r2e build ################### + +# TODO: r2e install/build command for docker building +# if local mode, then suggest user to install the repo in the r2e environment +@r2e.command() +@click.option('--exp_id', '-e', default="temp", help="Experiment ID used for identifying the Docker image") +@click.option('--local', is_flag=True, default=False, help="Whether to run the build locally. Default is building a Docker image.") +@click.option('--install-batch-size', '-k', default=10, type=int, help="Number of repositories to install in parallel in the Docker container.") +def build(**kwargs): + """Build a Docker image for your experiment.""" + repo_count = len([d for d in os.listdir(REPOS_DIR) if os.path.isdir(os.path.join(REPOS_DIR, d))]) + if repo_count == 0: + click.echo("No repositories found in the repos directory. Please run the setup command first.") + return + + click.echo(f"Found {repo_count} repositories in the repos directory.") + + if kwargs['local']: + click.echo("Running in local mode.") + click.secho("WARNING: If using `local` mode, please install repositories in the below directory manually.", fg="yellow") + click.echo(f" Repos directory path: {REPOS_DIR}") + click.echo(" Note: Ensure you're installing in the r2e virtual env.") + + else: + click.echo("Running in Docker mode.") + click.echo("Creating a dockerfile...") + generate_dockerfile(RepoArgs(**kwargs)) + + click.secho("WARNING: Building the image will take a while (recommended: Use tmux). Continue? [y/n]", fg="yellow") + if input().lower() != 'y': + click.echo("Exiting...") + return + + click.echo("\nBuilding the Docker image...") + + click.secho(f"WARNING: All {repo_count} repos will be installed in the container. Continue? [y/n]", fg="yellow") + if input().lower() != 'y': + click.echo("Exiting...") + return + + exp_id = kwargs['exp_id'] + path_to_dockerfile = REPOS_DIR / "r2e_final_dockerfile.dockerfile" + cmd = f"docker build -t r2e:{exp_id} -f {path_to_dockerfile} ." + + try: + subprocess.run(cmd, shell=True, check=True, cwd=REPOS_DIR) + except subprocess.CalledProcessError as e: + click.secho(f"Error building the Docker image: {e}", fg="red") + return + + click.secho("\nDocker image built successfully.", fg="green") + + +################### r2e extract ################### + +@r2e.command() +@click.option('--exp_id', '-e', default="temp", help="Experiment ID used for prefixing the extracted functions and methods") +@click.option('--overwrite_extracted', '-o', is_flag=True, help="Whether to overwrite the extracted functions and methods") +@click.option('--extraction_multiprocess', '-m', default=16, type=int, help="Number of processes to use for extracting functions and methods") +@click.option('--disable_dunder_methods', is_flag=True, default=False, help="Disable dunder method filter") +@click.option('--disable_no_docstring', is_flag=True, default=False, help="Disable functions w/o docstring filter") +@click.option('--disable_signature_filters', is_flag=True, default=False, help="Disable function signature filters (args, returns)") +@click.option('--disable_keyword_filters', is_flag=True, default=False, help="Disable keyword filters (docstring, body, name)") +@click.option('--disable_wrapper_filters', is_flag=True, default=False, help="Disable filters for wrappers (decorators, etc.)") +@click.option('--disable_lines_filter', is_flag=True, default=False, help="Disable lines filter") +@click.option('--disable_all_filters', is_flag=True, default=False, help="Disable all filters") +def extract(**kwargs): + """Extract functions and methods from repositories.""" + repo_args = RepoArgs(**kwargs) + build_functions_and_methods(repo_args) + click.echo("Extraction completed successfully.") + show_result_file(os.path.join(EXTRACTED_DATA_DIR, f"{repo_args.exp_id}_extracted.json")) + + +################### r2e generate ################### + +def gen_options(f): + options = [ + click.option('--context_type', default="sliced", help="The context type to use for the language model"), + click.option('--oversample_rounds', default=1, type=int, help="The number of rounds to oversample"), + click.option('--max_context_size', default=6000, type=int, help="The maximum context size"), + click.option('--save_chat', is_flag=True, default=False, help="Whether to save the chat messages"), + ] + for opt in reversed(options): + f = opt(f) + return f + +def llm_options(f): + options = [ + click.option('--multiprocess', '-m', default=8, type=int, help="The number of processes to use for multiprocessing"), + click.option('--model_name', default="gpt-4-turbo-2024-04-09", help="The model name to use for the language model"), + click.option('--n', default=1, type=int, help="The number of completions to generate"), + click.option('--top_p', default=0.95, type=float, help="The nucleus sampling probability"), + click.option('--max_tokens', default=1024, type=int, help="The maximum number of tokens to generate"), + click.option('--temperature', default=0.2, type=float, help="The temperature for the LLM request"), + click.option('--presence_penalty', default=0.0, type=float, help="The presence penalty for the LLM request"), + click.option('--frequency_penalty', default=0.0, type=float, help="The frequency penalty for the LLM request"), + click.option('--stop', multiple=True, default=[], help="The stop sequence for the LLM request"), + click.option('--openai_timeout', default=60, type=int, help="The timeout for the OpenAI API request"), + click.option('--use_cache', is_flag=True, default=True, help="Whether to use the cache for LLM queries. Default is True."), + click.option('--cache_batch_size', default=30, type=int, help="The batch size for cache writes.") + ] + for opt in reversed(options): + f = opt(f) + return f + +def _default_in_file_gen(ctx, param, value): + if not value: + exp_id = ctx.params.get('exp_id') + default_file = f"{exp_id}_extracted.json" + click.echo(f"Warning: --in_file not provided. Using `{default_file}` as per `exp_id`.") + return default_file + return value + + +@r2e.command() +@click.option('--exp_id', '-e', default="temp", help="Experiment ID used for prefixing the generated tests file") +@click.option('--function', '-f', default=None, help="Name of the function to show.") +@click.option('--in_file', '-i', callback=_default_in_file_gen, help="The input file for the test generator. Defaults to {exp_id}_extracted.json if not provided.") +@gen_options +@llm_options +def generate(**kwargs): + """Generate equivalence tests for the extracted functions.""" + test_gen_args = TestGenArgs(**kwargs) + R2ETestGenerator.generate(test_gen_args) + click.echo("Test generation completed successfully.") + show_result_file(os.path.join(TESTGEN_DIR, f"{test_gen_args.exp_id}_generate.json")) + + +################### r2e execute ################### + +def exec_options(f): + options = [ + click.option('--local', is_flag=True, default=False, help="Whether to run the execution service locally. Default is docker."), + click.option('--image', default="r2e:temp", help="The name of the docker image in which to run the tests"), + click.option('--execution-multiprocess', '-m', default=20, type=int, help="The number of processes to use for executing the functions and methods"), + click.option('--port', default=3006, type=int, help="The port to use for the execution service. Default is 3006 for sequential execution. For parallel, port is randomly picked."), + click.option('--timeout-per-task', default=180, type=int, help="The timeout for the execution service to complete one task in seconds"), + click.option('--batch-size', default=100, type=int, help="The number of functions to run before writing the output to the file") + ] + for opt in reversed(options): + f = opt(f) + return f + +def _default_in_file_exec(ctx, param, value): + if not value: + exp_id = ctx.params.get('exp_id') + default_file = f"{exp_id}_generate.json" + click.echo(f"Warning: --in_file not provided. Using `{default_file}` as per `exp_id`.") + return default_file + return value + +@r2e.command() +@click.option('--exp-id', '-e', default="temp", help="The experiment ID used for the test execution") +@click.option('--function', '-f', default=None, help="Name of the function to show.") +@click.option('--in-file', '-i', callback=_default_in_file_exec, help="The input file for the test execution") +@exec_options +def execute(**kwargs): + """Execute the generated equivalence tests.""" + + if kwargs['local']: + click.echo(f"Note: Running the execution service locally. Remove --local for docker.") + kwargs['image'] = "r2e:temp" + elif not kwargs['image']: + click.echo(f"Warning: --image not provided. Using `r2e:{kwargs['exp_id']}` as per `exp_id`.") + kwargs['image'] = f"r2e:{kwargs['exp_id']}" + elif kwargs['image'] == "r2e:temp": + click.echo("Warning: Using the default image `r2e:temp`. Use --image for custom image.") + else: + click.echo(f"Note: Using the provided image: {kwargs['image']}") + + testgen_file_path = os.path.join(TESTGEN_DIR, kwargs['in_file']) + if not os.path.exists(testgen_file_path): + click.echo(f"\nNo generated tests found for experiment ID: {kwargs['exp_id']}") + return + + args = ExecutionArgs(**kwargs) + EXECUTION_DIR.mkdir(parents=True, exist_ok=True) + EquivalenceTestRunner.run(args) + click.echo("Test execution completed successfully.") + show_result_file(os.path.join(EXECUTION_DIR, f"{args.exp_id}_out.json")) + + +################### r2e genexec ################### + +@r2e.command() +@click.option('--exp-id', '-e', default="temp", help="The experiment ID used for the test execution") +@click.option('--function', '-f', default=None, help="Name of the function to show.") +@click.option('--in-file', '-i', callback=_default_in_file_gen, help="The input file for the genexec agent.") +@click.option('--max_rounds', '-k', default=3, type=int, help="The maximum number of rounds to run the genexec process") +@click.option('--min-cov', default=0.8, type=float, help="The minimum branch coverage to consider a test valid") +@click.option('--min-valid', default=0.8, type=float, help="The minimum percentage of valid problems to achieve in the dataset") +@gen_options +@llm_options +@exec_options +def genexec(**kwargs): + """Generate-and-Execute Agent that iteratively generates and executes tests.""" + + if kwargs['local']: + click.echo(f"Note: Running the execution service locally. Remove --local for docker.") + kwargs['image'] = "r2e:temp" + elif not kwargs['image']: + click.echo(f"Warning: --image not provided. Using `r2e:{kwargs['exp_id']}` as per `exp_id`.") + kwargs['image'] = f"r2e:{kwargs['exp_id']}" + elif kwargs['image'] == "r2e:temp": + click.echo("Warning: Using the default image `r2e:temp`. Use --image for custom image.") + else: + click.echo(f"Note: Using the provided image: {kwargs['image']}") + + args = GenExecArgs(**kwargs) + EXECUTION_DIR.mkdir(parents=True, exist_ok=True) + R2EGenExec.genexec(args) + show_result_file(os.path.join(EXECUTION_DIR, f"{args.exp_id}_out.json")) + + +################### r2e list-functions ################### + +def extract_signature_and_docstring(code, max_width=100): + try: + tree = ast.parse(code) + function_def = tree.body[0] + args = [arg.arg for arg in function_def.args.args] + defaults = [ast.unparse(default) for default in function_def.args.defaults] + padded_defaults = [''] * (len(args) - len(defaults)) + defaults + signature = ', '.join(f'{arg}={default}' if default else arg for arg, default in zip(args, padded_defaults)) + docstring = ast.get_docstring(function_def) + if docstring: + docstring = textwrap.shorten(docstring, width=max_width, placeholder="...") + else: + docstring = "No docstring available" + return signature, docstring + except: + return "Could not parse signature", "Could not parse docstring" + +def get_func_info(func): + try: + full_name = f"{func.name}" if isinstance(func, Function) else f"{func.class_name}.{func.name}" + except: + full_name = func.name + + signature, docstring = extract_signature_and_docstring(func.code) + ftype = "Function" if isinstance(func, Function) else "Method" + return full_name, signature, docstring, ftype + + +@r2e.command() +@click.option('--exp_id', '-e', default="temp", help="Experiment ID used for prefixing the extracted functions file") +@click.option('--limit', '-l', default=10, type=int, help="The maximum number of functions to list") +@click.option('--detailed', '-d', is_flag=True, default=False, help="Show detailed information for each function") +def list_functions(exp_id, detailed, limit): + """List the extracted functions and methods.""" + file_path = os.path.join(EXTRACTED_DATA_DIR, f"{exp_id}_extracted.json") + + if not os.path.exists(file_path): + click.echo(f"No extracted functions found for experiment ID: {exp_id}") + return + + functions = load_functions(file_path) + click.echo(f"Total extracted functions/methods: {len(functions)}") + + for i, func in enumerate(functions[:limit], 1): + full_name, signature, docstring, ftype = get_func_info(func) + if detailed: + click.echo(f"\n{i}. {ftype}: {full_name}") + click.echo(f" File: {func.file.relative_file_path}") + click.echo(f" Signature: {func.name}({signature})") + click.echo(f" Docstring: {docstring}") + else: + click.echo(f"{i}. {full_name} ({func.file.relative_file_path}) [{ftype}]") + + if len(functions) > limit: + click.echo(f"\n... and {len(functions) - limit} more functions/methods. Use --limit to list more.") + + if not detailed: + click.echo("\nUse --detailed or -d for more information about each function.") + + +################### r2e show ################### + +@r2e.command() +@click.option('--exp_id', '-e', default="temp", help="Experiment ID used for prefixing the extracted functions file") +@click.option('--fname', '-f', required=False, help="Name of the function to show.") +@click.option('--code', '-c', is_flag=True, help="Show the code of the function.") +@click.option('--test', '-t', is_flag=True, help="Show the generated test for the function.") +@click.option('--result', '-r', is_flag=True, help="Show the generated test for the function.") +@click.option('--show-all', '-a', is_flag=True, help="Show (code, test, result) for function(s).") +# additional options +@click.option('--chat', is_flag=True, help="Show the chat messages leading up to the final test for a function.") +@click.option('--summary', is_flag=True, help="Show an overall summary of the test execution results.") +def show(exp_id, fname, code, test, result, show_all, chat, summary): + """Show detailed information about a specific function.""" + if not summary and not fname: + click.secho("Error: Please provide the name of the function using --fname.", fg="red") + return + + extracted_file_path = os.path.join(EXTRACTED_DATA_DIR, f"{exp_id}_extracted.json") + testgen_file_path = os.path.join(TESTGEN_DIR, f"{exp_id}_generate.json") + executed_file_path = os.path.join(EXECUTION_DIR, f"{exp_id}_out.json") + + if summary: + if not os.path.exists(executed_file_path): + click.echo(f"\nNo executed tests found for experiment ID: {exp_id}") + return + + click.echo(summarize(exp_id)) + return + + if not os.path.exists(extracted_file_path): + click.echo(f"No extracted functions found for experiment ID: {exp_id}") + return + + functions = load_functions(extracted_file_path) + target_function = next((func for func in functions if func.name == fname), None) + if not target_function: + click.echo(f"No function named '{fname}' found in the extracted data.") + return + + full_name, signature, docstring, ftype = get_func_info(target_function) + click.echo(f"{ftype}: {full_name}") + click.echo(f"File: {target_function.file.file_path}") + + if code or show_all: + click.echo("Code:\n") + click.echo(textwrap.indent(target_function.code, ' ')) + + if test or show_all: + if not (os.path.exists(testgen_file_path) or os.path.exists(executed_file_path)): + click.echo(f"\nNo generated tests found for experiment ID: {exp_id}") + return + + if os.path.exists(executed_file_path): + functions_under_test = load_functions_under_test(executed_file_path) + else: + functions_under_test = load_functions_under_test(testgen_file_path) + + target_fut = next((fut for fut in functions_under_test if fut.name == fname), None) + + if not target_fut: + if os.path.exists(testgen_file_path): + functions_under_test = load_functions_under_test(testgen_file_path) + target_fut = next((fut for fut in functions_under_test if fut.name == fname), None) + else: + click.echo(f"\nNo generated test found for function '{fname}'.") + return + + click.echo("\nGenerated Test:") + + for test_name, test_code in target_fut.test_history.latest_tests.items(): + click.echo(f"\n{test_name}:") + click.echo(textwrap.indent(test_code, ' ')) + + if result or show_all: + if not os.path.exists(executed_file_path): + click.echo(f"\nNo executed tests found for experiment ID: {exp_id}") + return + + executed_futs = load_functions_under_test(executed_file_path) + target_executed_fut = next((fut for fut in executed_futs if fut.name == fname), None) + + if not target_executed_fut: + click.echo(f"\nNo executed test found for function '{fname}'.") + return + + click.echo("\nTest Results:") + + for test_name, results in target_executed_fut.exec_stats['run_tests_logs'].items(): + click.echo(f"\n{test_name}:") + click.echo(json.dumps(results, indent=4)) + click.echo(json.dumps(target_executed_fut.coverage, indent=4)) + + if chat or show_all: + if not os.path.exists(executed_file_path): + click.echo(f"\nNo executed tests found for experiment ID: {exp_id}") + return + + executed_futs = load_functions_under_test(executed_file_path) + target_executed_fut = next((fut for fut in executed_futs if fut.name == fname), None) + + if not target_executed_fut: + click.echo(f"\nNo executed test found for function '{fname}'.") + return + + click.echo("\nChat Messages:") + chat_messages = target_executed_fut.test_history.latest_chat_messages + + if not chat_messages: + click.echo("No chat messages found.") + return + + for message in chat_messages: + click.secho(f"{message['role'].capitalize()}:", fg="green") + truncated_content = '\n'.join(message['content'].split('\n')[:50]) + click.echo(truncated_content) + +if __name__ == '__main__': + r2e() From 3de41ae4271462af46e3220e96439f73692e482d Mon Sep 17 00:00:00 2001 From: manishshettym Date: Sun, 20 Oct 2024 00:46:57 -0700 Subject: [PATCH 5/9] feat(execution): check_equiv function --- src/r2e/execution/helpers.py | 84 +++++++++++++++++++ src/r2e/generators/specgen/README.md | 2 +- src/r2e/generators/testgen/genexec.py | 4 +- src/r2e/paths.py | 1 + .../docker_builder/r2e_dockerfile_builder.py | 3 +- 5 files changed, 91 insertions(+), 3 deletions(-) diff --git a/src/r2e/execution/helpers.py b/src/r2e/execution/helpers.py index 4ec3b57..e9e8977 100644 --- a/src/r2e/execution/helpers.py +++ b/src/r2e/execution/helpers.py @@ -120,3 +120,87 @@ def self_equiv_futs( valids = [x["valid"] for x in submit_logs["run_tests_logs"].values()] return all(valids), submit_error, futs[0] + + +def check_equiv( + code: str, + fut: FunctionUnderTest | MethodUnderTest, + port: int, + local: bool = False, + image: str = "r2e:temp", + reuse_port: bool = False, +): + """Test if the given code is equivalent to the function under test (reference) + + Args: + fut (FunctionUnderTest | MethodUnderTest): function under test + code (str): code to be tested + port (int): port to run the service + local (bool, optional): run the service locally. Defaults to False. + image (str, optional): docker image to run the service. Defaults to "r2e:temp". + reuse_port (bool, optional): reuse the port. Defaults to False. + """ + + try: + simulator, conn = ServiceManager.get_service(fut.repo_id, port, local, image) + except Exception as e: + print("Service error@", fut.repo_id, repr(e)) + fut.test_history.update_exec_stats({"error": repr(e)}) + return False, repr(e), fut + + try: + fut = [fut] + service = conn.root + assert service is not None, "Test service is None" + + repo_data, fut_data, test_data = get_fut_data(fut, local=local) + service.setup_repo(repo_data) + service.setup_function(fut_data) + service.setup_test(test_data) + + init_response = service.init() + init_output = str(init_response["output"]) + init_error = str(init_response["error"]) + + ignore_patterns = ["SyntaxWarning: invalid escape sequence", "NameError: "] + + if init_error and not any(p in init_error for p in ignore_patterns): + logger.error(f"Init Error:\n{init_error}\n\n") + return False, init_error, fut + + # setup codegen mode + service.setup_codegen_mode() + exec_response = service.execute(code) + exec_output = str(exec_response["output"]) + exec_error = str(exec_response["error"]) + + # run equivalence test + try: + submit_response = service.submit() + except Exception as e: + logger.error(f"Submit Error:\n{repr(e)}\n\n") + return False, repr(e), fut + + submit_error = str(submit_response["error"]) + + if "logs" not in submit_response: + logger.error(f"Submit Error:\n{submit_error}\n\n") + return False, submit_error, fut + + submit_logs = json.loads(submit_response["logs"]) + submit_logs["output"] = submit_response["output"] + valids = [x["valid"] for x in submit_logs["run_tests_logs"].values()] + return all(valids), submit_error, submit_logs["run_tests_logs"] + + except Exception as e: + tb = traceback.format_exc() + pass + finally: + if simulator: + simulator.stop_container() + conn.close() + if not reuse_port: + ServiceManager.close_connection(port) + + print(f"Error:\n{tb}") + return False, tb, {"error": tb} diff --git a/src/r2e/generators/specgen/README.md b/src/r2e/generators/specgen/README.md index 48a1b1c..a7a68df 100644 --- a/src/r2e/generators/specgen/README.md +++ b/src/r2e/generators/specgen/README.md @@ -1,6 +1,6 @@ # Spec Refinement -Relevant Code: [SpecGenerator](./r2e/generators/specgen/generate.py) +Relevant Code: [SpecGenerator](./src/r2e/generators/specgen/generate.py) While the user is free to choose the extracted functions to benchmark code LLMs and programming agents, we provide some tools and strategies to build robust benchmarks based on our study. diff --git a/src/r2e/generators/testgen/genexec.py b/src/r2e/generators/testgen/genexec.py index 516b7bc..f7038ea 100644 --- a/src/r2e/generators/testgen/genexec.py +++ b/src/r2e/generators/testgen/genexec.py @@ -21,11 +21,13 @@ class R2EGenExec: def genexec(args): """Iteratively generate and execute tests for functions""" functions = load_functions(EXTRACTED_DATA_DIR / args.in_file) - functions = functions[:10] + functions = functions[:15] # TODO: remove this! debug only. if args.function: functions = [f for f in functions if f.name == args.function] + assert len(functions) > 0, "No functions found for the given input" + final_output_file = EXECUTION_DIR / f"{args.exp_id}_out.json" worklist: list[TestGenTask] = R2ETestGenerator.prepare_tasks(args, functions) count = len(worklist) diff --git a/src/r2e/paths.py b/src/r2e/paths.py index 3ff8ef0..b02fc1f 100644 --- a/src/r2e/paths.py +++ b/src/r2e/paths.py @@ -26,6 +26,7 @@ CACHE_PATH = CACHE_DIR / "cache.json" EXTRACTION_DIR = R2E_BUCKET_DIR / "extracted_data" +BASE_DOCKERFILE = current_dir / "repo_builder/docker_builder/r2e_base_dockerfile.txt" PDM_BIN_DIR = "/home/naman_jain/.local/bin:$PATH" diff --git a/src/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py b/src/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py index e22e726..785406f 100644 --- a/src/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py +++ b/src/r2e/repo_builder/docker_builder/r2e_dockerfile_builder.py @@ -5,10 +5,11 @@ from r2e.paths import REPOS_DIR from r2e.repo_builder.repo_args import RepoArgs +from r2e.paths import BASE_DOCKERFILE def generate_dockerfile(repo_args: RepoArgs): - with open("src/r2e/repo_builder/docker_builder/r2e_base_dockerfile.txt", "r") as f: + with open(BASE_DOCKERFILE, "r") as f: dockerfile = f.read() num_repos = len(os.listdir(REPOS_DIR)) From 44f2416e4cede8f9b0462a1202c247bfa81a1a6c Mon Sep 17 00:00:00 2001 From: manishshettym Date: Sun, 20 Oct 2024 00:47:41 -0700 Subject: [PATCH 6/9] docs: usage notebook; chore: make vllm optional dep to speedup install --- README.md | 5 +- docs/usage.ipynb | 301 +++++++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 7 +- uv.lock | 190 ++++++++++++++++++++---------- 4 files changed, 436 insertions(+), 67 deletions(-) create mode 100644 docs/usage.ipynb diff --git a/README.md b/README.md index fa2e0c9..9370477 100644 --- a/README.md +++ b/README.md @@ -10,6 +10,7 @@ [![Website](https://img.shields.io/badge/website-r2e.dev-blue)](https://r2e.dev) [![Paper](https://img.shields.io/badge/paper-ICML%202024-purple)](https://r2e.dev/pdfs/paper.pdf) [![Demos](https://img.shields.io/badge/youtube-demos-maroon)](https://www.youtube.com/watch?v=NrTEbwyofAg&list=PLA_lMIaJefMZyZOac67rxwRSjmE8rNZ9v) + [![Notebook](https://img.shields.io/badge/usage.ipynb-jupyter?logo=Jupyter&color=gray)](./docs/usage.ipynb) [![GitHub license](https://img.shields.io/badge/License-MIT-blu.svg)](https://lbesson.mit-license.org/) @@ -165,9 +166,9 @@ Result: /home/user/buckets/r2e_bucket/execution/quickstart_out.json ## Additional Resources -1. **Improving Specifications:**: Find details about improving the specifications of extracted functions to build benchmarks using LLMs @ [Spec Refinement](./r2e/generators/specgen/README.md). +1. **Improving Specifications:**: Find details about improving the specifications of extracted functions to build benchmarks using LLMs @ [Spec Refinement](./src/r2e/generators/specgen/README.md). -2. **PAT: Program Analysis Tools**: We developed an in-house program and static analysis toolbox that powers R2E along with LLMs. These tools can be used independently too. Learn more about them @ [PAT](./r2e/pat/README.md). +2. **PAT: Program Analysis Tools**: We developed an in-house program and static analysis toolbox that powers R2E along with LLMs. These tools can be used independently too. Learn more about them @ [PAT](./src/r2e/pat/README.md). ## Citation diff --git a/docs/usage.ipynb b/docs/usage.ipynb new file mode 100644 index 0000000..42470c2 --- /dev/null +++ b/docs/usage.ipynb @@ -0,0 +1,301 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# R2E Usage" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "This notebook provides a quickstart usage guide for R2E. It describes how to use the R2E's ([CLI](CLI.md)) to:\n", + "1. setup and extract functions from repositories\n", + "2. build and install repositories\n", + "3. generate and execute **Equivalence Tests** for the functions\n", + "\n", + "Finally, it provides example use-cases of R2E such as building code generation benchmarks for LLMs and Agents." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### 1. Setup and Extract\n", + "\n", + "First, choose a unique experiment id (e.g., `quickstart`) that you can reuse for the entire workflow. Then setup repositories and extract functions from:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "! r2e setup -r https://github.com/google-research/python-graphs\n", + "! r2e extract -e quickstart --overwrite_extracted" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### 2. Build and Install\n", + "\n", + "**Docker Mode:** By default, all repos in REPOS_DIR are installed in a Docker image for sandboxed execution. Find the generated dockerfile in REPOS_DIR.\n", + "\n", + "**Local Mode:** Use `--local` which will suggest the steps ***you need to take to manually*** to install repos." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "! r2e build -e quickstart --local" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "#### 3. Generate and Execute Tests\n", + "\n", + "R2E provides a single command that runs a series of `k` generate-execute rounds w/ feedback. The loop continues until `min_valid`% functions reach a `min_cov`% branch coverage. Defaults: `k=3`, `min_valid=0.8`, and `min_cov=0.8`. \n", + "\n", + "Generated tests are executed in the Docker container. Use `--local` to execute locally.\n", + "You can also run `r2e generate` and `r2e execute` separately ([cli.md](./CLI.md))." + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "! r2e genexec -e quickstart --local --save_chat" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Let's take a look at the results:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "! r2e show -e quickstart --summary" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Let's take a look at one of the functions extracted from the repositories:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "! r2e show -e quickstart -f cyclomatic_complexity --show-all" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "## Use Case: Coding Benchmarks" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "from r2e.paths import *\n", + "from r2e.utils.data import *\n", + "from r2e.execution.helpers import run_fut_with_port, check_equiv\n", + "from r2e.execution.service import ServiceManager" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Select a function you want to evaluate with" + ] + }, + { + "cell_type": "code", + "execution_count": 56, + "metadata": {}, + "outputs": [], + "source": [ + "fname = \"make_node_from_ast_node\"\n", + "futs = load_functions_under_test(EXECUTION_DIR / \"quickstart_out.json\")\n", + "fut = next(f for f in futs if f.name == fname)\n", + "# print(fut.context.context) # uncomment to see the context" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Create a codegen problem by removing the body of the function" + ] + }, + { + "cell_type": "code", + "execution_count": 58, + "metadata": {}, + "outputs": [], + "source": [ + "def remove_body(context, function_name):\n", + " import re\n", + "\n", + " def replacement(match):\n", + " signature = match.group(1)\n", + " docstring = match.group(2) or \"\"\n", + " return f\"{signature}{docstring}pass\\n\"\n", + "\n", + " pattern = rf'(def\\s+{re.escape(function_name)}\\s*\\([^)]*\\):)(\\s*\"\"\"[\\s\\S]*?\"\"\"\\s*)?([^@]+)'\n", + " modified_context = re.sub(pattern, replacement, context, flags=re.DOTALL)\n", + " return modified_context\n", + "\n", + "\n", + "prob = remove_body(fut.context.context, fname)\n", + "# print(prob) # uncomment to see the problem" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Evaluate an LLM's ability to complete the function body (i.e., solve the problem)" + ] + }, + { + "cell_type": "code", + "execution_count": 79, + "metadata": {}, + "outputs": [], + "source": [ + "from openai import OpenAI\n", + "from r2e.generators.testgen.utils import extract_codeblock\n", + "\n", + "client = OpenAI(api_key=os.getenv(\"OPENAI_KEY\"))\n", + "\n", + "PROMPT = (\n", + " \"You are given a function signature, docstring, and some context.\\n\\n{prob}\\n\"\n", + " \"Complete the body of {fname} and return the entire function as\\n```python\\n# YOUR CODE HERE\\n```\"\n", + ")\n", + "\n", + "def get_completion(prompt):\n", + " response = client.chat.completions.create(\n", + " messages=[\n", + " {\"role\": \"system\", \"content\": \"You are a Python programming expert.\"},\n", + " {\"role\": \"user\", \"content\": prompt},\n", + " ],\n", + " model=\"gpt-4o\",\n", + " temperature=0.2,\n", + " )\n", + " return extract_codeblock(response.choices[0].message.content)\n", + "\n", + "code = get_completion(PROMPT.format(prob=prob, fname=fname))\n" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Run equivalence test to check if the generated code is correct:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "valid, tb, res = check_equiv(code, fut, port=3006, local=True, reuse_port=True)\n", + "\n", + "print(\"Validity:\", valid)\n", + "print(\"Traceback:\\n\", tb)" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Evaluate **Agents** with execution feedback too:" + ] + }, + { + "cell_type": "code", + "execution_count": 81, + "metadata": {}, + "outputs": [], + "source": [ + "def Agent(prob, fut, fname, max_attempts=5):\n", + " prompt = PROMPT.format(prob=prob, fname=fname)\n", + "\n", + " for attempt in range(max_attempts):\n", + " code = get_completion(prompt)\n", + " print(f\"Attempt {attempt + 1}:\\n{code}\")\n", + " valid, tb, res = check_equiv(code, fut, port=3006, local=True, reuse_port=True)\n", + "\n", + " if valid:\n", + " print(f\"✅ Solution found on attempt {attempt + 1}\\n\")\n", + " return json.dumps(res, indent=2)\n", + "\n", + " print(f\"❌ Attempt {attempt + 1} failed. Refining based on feedback.\\n\")\n", + " prompt += f\"\\n\\nThe previous attempt failed.\\nHere's your previous attempt: {code}\\n\\nHere's the error:\\n{tb}\\nPlease fix the code and try again.\"\n", + "\n", + " return f\"❌ Failed to find a valid solution after {max_attempts} attempts.\"" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "res = Agent(prob, fut, fname)\n", + "print(f\"Result:\\n{res}\")" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": ".venv", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.12.2" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} diff --git a/pyproject.toml b/pyproject.toml index e721cf7..6ce514b 100644 --- a/pyproject.toml +++ 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@@ -1,17 +1,14 @@ import os import json +from diskcache import Cache from r2e.paths import CACHE_PATH, CACHE_DIR class Cache: def __init__(self) -> None: - if os.path.exists(CACHE_PATH): - with open(CACHE_PATH) as f: - self.cache_dict = json.load(f) - else: - os.makedirs(CACHE_DIR, exist_ok=True) - self.cache_dict = {} + os.makedirs(CACHE_DIR, exist_ok=True) + self.cache_dict = Cache(CACHE_PATH) @staticmethod def process_payload(payload): @@ -21,14 +18,13 @@ def process_payload(payload): def get_from_cache(self, payload): payload_cache = self.process_payload(payload) - if payload_cache in self.cache_dict: + if self.cache_dict.get(payload_cache): return self.cache_dict[payload_cache] return None def add_to_cache(self, payload, output): payload_cache = self.process_payload(payload) - self.cache_dict[payload_cache] = output + self.cache_dict.set(payload_cache, output) def save_cache(self): - with open(CACHE_PATH, "w") as f: - json.dump(self.cache_dict, f, indent=4) + pass diff --git a/src/r2e/pat/dependency_slicer/ast_statements.py b/src/r2e/pat/dependency_slicer/ast_statements.py index 5a10963..1ac2181 100644 --- a/src/r2e/pat/dependency_slicer/ast_statements.py +++ b/src/r2e/pat/dependency_slicer/ast_statements.py @@ -179,9 +179,10 @@ def build_var_to_stmt_idxs(self) -> dict[str, list[int]]: stmt = stmt_obj.stmt if isinstance(stmt, ast.Assign): for target in stmt.targets: - assigned_target = AstStatements.assigned_expr_name_str(target) - if assigned_target is not None: - var_to_stmt_idxs[assigned_target].append(idx) + assigned_targets = AstStatements.assigned_expr_name_str(target) + if assigned_targets is not None: + for assigned_target in assigned_targets: + var_to_stmt_idxs[assigned_target].append(idx) elif isinstance(stmt, (ast.AugAssign, ast.AnnAssign)): assigned_target = AstStatements.assigned_expr_name_str(stmt.target) if assigned_target is not None: @@ -211,13 +212,21 @@ def find_wildcard_imports(self): return wildcard_stmt_idxs @staticmethod - def assigned_expr_name_str(expr: ast.expr) -> str | None: + def assigned_expr_name_str(expr: ast.expr) -> list[str] | None: if isinstance(expr, ast.Name): - return expr.id + return [expr.id] elif isinstance(expr, ast.Attribute): return AstStatements.assigned_expr_name_str(expr.value) elif isinstance(expr, ast.Subscript): return AstStatements.assigned_expr_name_str(expr.value) + elif isinstance(expr, (ast.Tuple, ast.List)): + assigned_names = [] + for el in expr.elts: + assigned_name = AstStatements.assigned_expr_name_str(el) + if assigned_name is not None: + assigned_names.extend(assigned_name) + return assigned_names + else: return None diff --git a/src/r2e/pat/dependency_slicer/slicer_main.py b/src/r2e/pat/dependency_slicer/slicer_main.py index 77b165f..903ce82 100644 --- a/src/r2e/pat/dependency_slicer/slicer_main.py +++ b/src/r2e/pat/dependency_slicer/slicer_main.py @@ -40,6 +40,7 @@ def __init__( ast_stmt_list: list[AstStatement], file_ast_cache: dict[str, AstStatements], depth: int = -1, + slice_imports: bool = True, ): self.repo = repo self.ast_stmt_list = ast_stmt_list @@ -47,7 +48,6 @@ def __init__( try: self.callgraph_explorer = CallGraphExplorer(self.repo) except Exception as e: - print(repr(e)) self.callgraph_explorer = None self.recursion_stack: list[AstStatement] = [] @@ -57,9 +57,14 @@ def __init__( self.depth = depth + self.slice_imports = slice_imports + @classmethod def from_function_models( - cls, function_models: Function | list[Function], depth: int = -1 + cls, + function_models: Function | list[Function], + depth: int = -1, + slice_imports: bool = True, ): function_models = ( function_models if isinstance(function_models, list) else [function_models] @@ -87,10 +92,15 @@ def from_function_models( assert resolved_function is not None ast_stmt_list.append(resolved_function) - return cls(repo, ast_stmt_list, file_ast_cache, depth) + return cls(repo, ast_stmt_list, file_ast_cache, depth, slice_imports) @classmethod - def from_class_models(cls, class_models: Class | list[Class], depth: int = -1): + def from_class_models( + cls, + class_models: Class | list[Class], + depth: int = -1, + slice_imports: bool = True, + ): class_models = ( class_models if isinstance(class_models, list) else [class_models] ) @@ -115,7 +125,60 @@ def from_class_models(cls, class_models: Class | list[Class], depth: int = -1): assert resolved_class is not None ast_stmt_list.append(resolved_class) - return cls(repo, ast_stmt_list, file_ast_cache, depth) + return cls(repo, ast_stmt_list, file_ast_cache, depth, slice_imports) + + @classmethod + def from_funclass_models( + cls, + funclass_models: list[Function | Class], + depth: int = -1, + slice_imports: bool = True, + ): + funclass_models = ( + funclass_models if isinstance(funclass_models, list) else [funclass_models] + ) + assert ( + len(set([f.repo for f in funclass_models])) == 1 + ), f"{[f.repo for f in funclass_models]} are not the same repos" + + repo = funclass_models[0].repo + + file_ast_cache: dict[str, AstStatements] = {} + + ast_stmt_list: list[AstStatement] = [] + for funclass_model in funclass_models: + if isinstance(funclass_model, Function): + assert funclass_model.function_name is not None + if funclass_model.file_path in file_ast_cache: + ast_stmts = file_ast_cache[funclass_model.file_path] + else: + ast_stmts = AstStatements(funclass_model.file) + file_ast_cache[funclass_model.file_path] = ast_stmts + + resolved_function = ast_stmts.find_function_stmt_with_name( + funclass_model.function_name + ) + assert ( + resolved_function is not None + ), f"{funclass_model.function_name} {funclass_model.file_path}" + ast_stmt_list.append(resolved_function) + elif isinstance(funclass_model, Class): + assert funclass_model.class_name is not None + if funclass_model.file_path in file_ast_cache: + ast_stmts = file_ast_cache[funclass_model.file_path] + else: + ast_stmts = AstStatements(funclass_model.file) + file_ast_cache[funclass_model.file_path] = ast_stmts + + resolved_class = ast_stmts.find_class_stmt_with_name( + funclass_model.class_name + ) + assert ( + resolved_class is not None + ), f"{funclass_model.class_name} {funclass_model.file_path}" + ast_stmt_list.append(resolved_class) + + return cls(repo, ast_stmt_list, file_ast_cache, depth, slice_imports) def run(self): for ast_stmt in self.ast_stmt_list: @@ -133,11 +196,15 @@ def visit( if depth == 0: return - print(f"Visiting {stmt} with depth {depth}") if stmt in self.visited_set or stmt in self.recursion_stack: return + + # print(f"Visiting {stmt.file_path} {stmt.stmt.lineno} looking for {search_key}") + for ast_type, handler in HandlersMapping.items(): if isinstance(stmt.stmt, ast_type): + if (not self.slice_imports) and issubclass(handler, ImportHandler): + return handler_instance = handler(stmt, all_stmts, search_key, self, depth) handler_instance.handle() return diff --git a/tests/pat/slicers/test_globals_finder/test_globals_finder.py b/tests/pat/slicers/test_globals_finder/test_globals_finder.py 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models (#25) --- src/r2e/llms/__init__.py | 2 ++ src/r2e/llms/cache_object.py | 4 ++-- src/r2e/llms/language_model.py | 8 ++++++++ src/r2e/llms/openai_runner.py | 26 ++++++++++++++++---------- 4 files changed, 28 insertions(+), 12 deletions(-) diff --git a/src/r2e/llms/__init__.py b/src/r2e/llms/__init__.py index e69de29..8723b9c 100644 --- a/src/r2e/llms/__init__.py +++ b/src/r2e/llms/__init__.py @@ -0,0 +1,2 @@ +from r2e.llms.llm_args import LLMArgs +from r2e.llms.completions import LLMCompletions diff --git a/src/r2e/llms/cache_object.py b/src/r2e/llms/cache_object.py index 8afd6ce..d8be166 100644 --- a/src/r2e/llms/cache_object.py +++ b/src/r2e/llms/cache_object.py @@ -1,6 +1,6 @@ import os import json -from diskcache import Cache +from diskcache import Cache as DiskCache from r2e.paths import CACHE_PATH, CACHE_DIR @@ -8,7 +8,7 @@ class Cache: def __init__(self) -> None: os.makedirs(CACHE_DIR, exist_ok=True) - self.cache_dict = Cache(CACHE_PATH) + self.cache_dict = DiskCache(CACHE_DIR) @staticmethod def process_payload(payload): diff --git a/src/r2e/llms/language_model.py b/src/r2e/llms/language_model.py index 07d4852..4c18e58 100644 --- a/src/r2e/llms/language_model.py +++ b/src/r2e/llms/language_model.py @@ -93,4 +93,12 @@ class LanguageModel: model_name="gpt-4o", style=LanguageModelStyle.OpenAI, ), + LanguageModel( + model_name="o1-preview", + style=LanguageModelStyle.OpenAI, + ), + LanguageModel( + model_name="o1-mini", + style=LanguageModelStyle.OpenAI, + ), ] diff --git a/src/r2e/llms/openai_runner.py b/src/r2e/llms/openai_runner.py index 56408df..4f52e8b 100644 --- a/src/r2e/llms/openai_runner.py +++ b/src/r2e/llms/openai_runner.py @@ -18,16 +18,22 @@ class OpenAIRunner(BaseRunner): def __init__(self, args: LLMArgs, model: LanguageModel): super().__init__(args, model) - self.client_kwargs: dict[str, Any] = { - "model": args.model_name, - "temperature": args.temperature, - "max_tokens": args.max_tokens, - "top_p": args.top_p, - "frequency_penalty": args.frequency_penalty, - "presence_penalty": args.presence_penalty, - "n": args.n, - "timeout": args.openai_timeout, - } + if "o1" in args.model_name: + self.client_kwargs: dict[str, Any] = { + "model": args.model_name, + "max_completion_tokens": args.max_tokens, + } + else: + self.client_kwargs = { + "model": args.model_name, + "temperature": args.temperature, + "max_tokens": args.max_tokens, + "top_p": args.top_p, + "frequency_penalty": args.frequency_penalty, + "presence_penalty": args.presence_penalty, + "n": args.n, + "timeout": args.openai_timeout, + } def config(self): return self.client_kwargs From 7dc87d2bc01b0129e97319fc97a71234408ac7fe Mon Sep 17 00:00:00 2001 From: Manish Shetty Date: Thu, 2 Jan 2025 16:29:59 +0530 Subject: [PATCH 9/9] fix(base_runner): assertion invalid for o1 --- src/r2e/llms/base_runner.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/r2e/llms/base_runner.py b/src/r2e/llms/base_runner.py index 3d7c8b5..b7d3962 100644 --- a/src/r2e/llms/base_runner.py +++ b/src/r2e/llms/base_runner.py @@ -49,7 +49,8 @@ def run_single(combined_args) -> list[str]: return cache_result result = call_method(payload) - assert len(result) == args.n + if 'o1' not in args.model_name: + assert len(result) == args.n return result