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or maybe continue to use functions from qtl
The text was updated successfully, but these errors were encountered:
As discussed with @gkeele, there are some decisions to make about what to plot when the model did not converge at a specific locus
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done in bb17f7d
currently plotting LR at each locus and interpolating linearly over NA's
next steps will be to give the user options on what to plot -- LR vs. LOD vs. single-locus-p-value (chisq test on LR)
next next steps will rely on having permutations set up so that we can compute and then plot p-values that correct for multiple comparisons
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or maybe continue to use functions from qtl
The text was updated successfully, but these errors were encountered: