DESCRIPTION

Package: outbreaker2
Version: 1.1.3
Date: 2022-05-23
Title: Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic
    and Genomic Data
Authors@R: c(person("Thibaut", "Jombart",
                    email = "thibautjombart@gmail.com",
		    role = c("aut")),
	     person("Finlay", "Campbell",
	            email = "finlaycampbell93@gmail.com",
		    role = c("aut", "cre")),
	     person("Rich", "Fitzjohn",
	            email = "r.fitzjohn@imperial.ac.uk",
		    role = c("aut")),
	     person("Gerry", "Tonkin-Hill",
	            email = "gqt20@cam.ac.uk",
		    role = c("ctb")),
	     person("Kristjan", "Eldjarn",
	            email = "kristjan@eldjarn.net",
		    role = c("ctb")),
	     person("Alexis", "Robert",
	            email = "alexis.robert@lshtm.ac.uk",
		    role = c("ctb")))
Maintainer: Finlay Campbell <finlaycampbell93@gmail.com>
Description: Bayesian reconstruction of disease outbreaks using epidemiological
    and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser
    C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F,
    Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.
License: MIT + file LICENSE
Suggests:
    coda,
    microbenchmark,
    testthat,
    knitr,
    rmarkdown,
    igraph,
    epicontacts,
    adegenet
Depends:
    R (>= 3.0.0)
Imports:
    utils,
    methods,
    stats,
    grDevices,
    Rcpp,
    ape,
    ggplot2,
    magrittr,
    visNetwork
LazyData: true
LinkingTo: Rcpp
Encoding: UTF-8
RoxygenNote: 7.1.2
SystemRequirements: C++11
VignetteBuilder: knitr