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Stalling during Calling copy number events (Computing Cluster (Copy Number)) #40

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ncasiraghi opened this issue Feb 23, 2022 · 2 comments
Open

Stalling during Calling copy number events (Computing Cluster (Copy Number)) #40

ncasiraghi opened this issue Feb 23, 2022 · 2 comments

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@ncasiraghi
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Hi there.
I am running into an issue with web-based Ginkgo where the process is stalling at 98% of Step 2: Calling copy number events ...(Computing Cluster (Copy Number))

I am hoping someone can look into this. The URL for the run is http://qb.cshl.edu/ginkgo?q=results/YmSnGBrcWn8TC9IL7ieK

thank you
nicola
@ncasiraghi ncasiraghi changed the title Stalling during copy number events (Computing Cluster (Copy Number)) Stalling during Calling copy number events (Computing Cluster (Copy Number)) Feb 23, 2022
@WeichenZhou
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I have a similar issue here as stalling at
'68% complete.
Step 2: 5% Calling copy number events...'

@WeichenZhou
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WeichenZhou commented Sep 3, 2022 •
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Okay... seems like after excluding some bad batches/barcodes/cells, I can get the analysis summary now... thanks!

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@WeichenZhou @ncasiraghi