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Killed error, I'm unable to get all the 10 output files #62

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PavithraV0223 opened this issue Apr 4, 2023 · 2 comments
Open

Killed error, I'm unable to get all the 10 output files #62

PavithraV0223 opened this issue Apr 4, 2023 · 2 comments

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@PavithraV0223
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Rscript MinIONQC.R -i sequencing_summary_FAV26766_.txt
INFO [2023-04-04 14:31:33] Loading input file: sequencing_summary_FAV26766_.txt
INFO [2023-04-04 14:31:39] MinION flowcell detected
INFO [2023-04-04 14:34:44] .: creating output directory:.
INFO [2023-04-04 14:34:44] .: summarising input file for flowcell
INFO [2023-04-04 14:35:01] .: plotting length histogram
INFO [2023-04-04 14:35:16] .: plotting mean Q score histogram
INFO [2023-04-04 14:35:29] .: plotting flowcell overview
INFO [2023-04-04 14:42:09] .: plotting flowcell yield over time
INFO [2023-04-04 14:43:17] .: plotting flowcell yield by read length
Killed

@jsabban
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jsabban commented Apr 12, 2023

It could be a lack of memory. Retry with more memory ; you need about two times le weight of the sequencing summary to run MinionQC.

@PavithraV0223
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Thank you so much, I'll try it again with memory extension.

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