From d4a362c9849fd62a10801467f080a8dca4514290 Mon Sep 17 00:00:00 2001 From: rsanchezgarc Date: Sat, 5 Mar 2022 13:21:11 +0000 Subject: [PATCH] Update README.md --- README.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index c8fad22..9c5950b 100644 --- a/README.md +++ b/README.md @@ -1,12 +1,12 @@ -# BIPSPI v2: Enhancing partner-specific binding site prediction with better data +# BIPSPI+: Enhancing partner-specific binding site prediction with better data [BIPSPI](http://bipspi.cnb.csic.es/xgbPredApp/) (xgBoost Interface Prediction of Specific Partner Interactions) is a partner specific -binding site predictor that employs the XGBoost algorithm. BIPSPI v2 has been trained on +binding site predictor that employs the XGBoost algorithm. This new version, BIPSPI+, has been trained on newer and larger datasets compiled from the PDB, severely improving its performance. -
BIPSPI v2 can be employed to predict partner-specific binding sites given two atomic models, +
BIPSPI+ can be employed to predict partner-specific binding sites given two atomic models, two sequences, or one sequence and one structure. -BIPSPI v2 is distributed as a Docker image and as a GitHub repository. Installation is only required in +BIPSPI+ is distributed as a Docker image and as a GitHub repository. Installation is only required in the latter case. Complete guide can be found in: - [DOCKER image](docs/docker_help.md) @@ -17,8 +17,8 @@ the latter case. Complete guide can be found in: - Homo-complexes and hetero-complex specific models, boosting performance especially when predicting homo-complexes. -- Sequence vs structure mode. Version 1 could only be executed with two sequences or two structures. Now one sequence and one structure could be used as input as well. -- Atomatic correlated mutations (optional) +- Sequence vs structure mode. Original version could only be executed with two sequences or two structures. Now one sequence and one structure could be used as input as well. +- Atomatic correlated mutations (optinal)