diff --git a/src/main/java/org/janelia/saalfeldlab/control/VPotControl.java b/src/main/java/org/janelia/saalfeldlab/control/VPotControl.java index 6491095..0ee3ca9 100644 --- a/src/main/java/org/janelia/saalfeldlab/control/VPotControl.java +++ b/src/main/java/org/janelia/saalfeldlab/control/VPotControl.java @@ -63,7 +63,7 @@ public interface VPotControl extends AdjustableClippingIntControl { * this into an enum or if we will have to permit other display modes * (for which keeping this na integer sounds fair). * - * @param display + * @param display the display type */ public void setDisplayType(final int display); } diff --git a/src/main/java/org/janelia/saalfeldlab/control/mcu/XTouchMiniMCUControlPanel.java b/src/main/java/org/janelia/saalfeldlab/control/mcu/XTouchMiniMCUControlPanel.java index d2a13e7..151761b 100644 --- a/src/main/java/org/janelia/saalfeldlab/control/mcu/XTouchMiniMCUControlPanel.java +++ b/src/main/java/org/janelia/saalfeldlab/control/mcu/XTouchMiniMCUControlPanel.java @@ -128,8 +128,8 @@ public int getNumFaderControls() { /** * Reset all controls. * - * @throws InterruptedException - * @throws InvalidMidiDataException + * @throws InterruptedException if interrupted + * @throws InvalidMidiDataException if midi data are invalid */ public void reset() throws InterruptedException, InvalidMidiDataException { diff --git a/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5Viewer.java b/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5Viewer.java index 8faa6fc..fcfaf1d 100644 --- a/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5Viewer.java +++ b/src/main/java/org/janelia/saalfeldlab/n5/bdv/N5Viewer.java @@ -133,10 +133,14 @@ public N5Viewer(final Frame parent, final DataSelection selection) throws IOExce /** * Creates a new N5Viewer with the given data sets. + * + * @param the image data type + * @param the image volatile data type + * @param the n5 reader type * @param parentFrame parent frame, can be null * @param dataSelection data sets to display * @param wantFrame if true, use BdvHandleFrame and display a window. If false, use a BdvHandlePanel and do not display anything. - * @throws IOException + * @throws IOException if data could not be read */ public < T extends NumericType< T > & NativeType< T >, V extends Volatile< T > & NumericType< V >, diff --git a/src/main/java/org/janelia/saalfeldlab/n5/bdv/tools/boundingbox/BoxCrop.java b/src/main/java/org/janelia/saalfeldlab/n5/bdv/tools/boundingbox/BoxCrop.java index 6a22cc2..b73b030 100644 --- a/src/main/java/org/janelia/saalfeldlab/n5/bdv/tools/boundingbox/BoxCrop.java +++ b/src/main/java/org/janelia/saalfeldlab/n5/bdv/tools/boundingbox/BoxCrop.java @@ -465,9 +465,10 @@ protected boolean canStackVisibleSources( boolean showMessage ) * * @param srcList the source list * @param affine the affine + * @param tolerance the tolerance within which affines may differ to be "equal" * @return true if all sources have a matching scale level */ - protected boolean findMatchingScaleLevels( List> srcList, AffineTransform3D affine, double threshold ) + protected boolean findMatchingScaleLevels( List> srcList, AffineTransform3D affine, double tolerance ) { scales = new int[ srcList.size() ]; Arrays.fill( scales, -1 ); @@ -480,7 +481,7 @@ protected boolean findMatchingScaleLevels( List> srcList, for( int j = 0; j < N; j++ ) { sac.getSpimSource().getSourceTransform( 0, j, testTransform ); - if( affineAlmostEqual( testTransform, affine, threshold )) + if( affineAlmostEqual( testTransform, affine, tolerance )) { scales[i] = j; continue; diff --git a/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSource.java b/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSource.java index 8488b30..d37c57f 100644 --- a/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSource.java +++ b/src/main/java/org/janelia/saalfeldlab/n5/metadata/MetadataSource.java @@ -195,7 +195,7 @@ public static DefaultAxisMetadata defaultAxes( N5DatasetMetadata meta ) { * The default axes for dialects that store only spatial data (n5viewer and cosem). * * @param meta the metadata - * @return axes + * @return axes default axis metadata */ public static DefaultAxisMetadata defaultAxesSpatial( N5DatasetMetadata meta ) {