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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(ClusterORA)
export(DMA)
export(LoadGaude)
export(LoadHallmarks)
export(LoadKEGG)
export(LoadMetalinks)
export(LoadRAMP)
export(MCA_2Cond)
export(MCA_CoRe)
export(MCA_rules)
export(Make_GeneMetabSet)
export(MappingAmbiguity)
export(MetaAnalysis)
export(MetaPK)
export(MetaProViz_log)
export(MetaProViz_logfile)
export(MetaProViz_set_loglevel)
export(PoolEstimation)
export(PreProcessing)
export(ReplicateSum)
export(StandardORA)
export(ToyData)
export(TranslateID)
export(VizHeatmap)
export(VizPCA)
export(VizSuperplot)
export(VizVolcano)
export(metaproviz_config_path)
export(metaproviz_load_config)
export(metaproviz_reset_config)
export(metaproviz_save_config)
importFrom(OmnipathR,ambiguity)
importFrom(OmnipathR,config_path)
importFrom(OmnipathR,id_types)
importFrom(OmnipathR,load_config)
importFrom(OmnipathR,logfile)
importFrom(OmnipathR,read_log)
importFrom(OmnipathR,reset_config)
importFrom(OmnipathR,save_config)
importFrom(OmnipathR,set_loglevel)
importFrom(OmnipathR,translate_ids)
importFrom(broom,tidy)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,select_if)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(dplyr,summarise_at)
importFrom(dplyr,ungroup)
importFrom(factoextra,fviz_screeplot)
importFrom(ggbeeswarm,geom_beeswarm)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,annotation_custom)
importFrom(ggplot2,autoplot)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_dotplot)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_qq)
importFrom(ggplot2,geom_qq_line)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_linetype_discrete)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_summary)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggpubr,get_legend)
importFrom(ggpubr,stat_pvalue_manual)
importFrom(ggrepel,geom_text_repel)
importFrom(grid,convertUnit)
importFrom(grid,unit)
importFrom(gridExtra,grid.arrange)
importFrom(gtools,foldchange2logratio)
importFrom(hash,keys)
importFrom(hash,values)
importFrom(inflection,uik)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(logger,log_info)
importFrom(logger,log_trace)
importFrom(logger,log_warn)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,add)
importFrom(magrittr,extract)
importFrom(magrittr,extract2)
importFrom(magrittr,multiply_by)
importFrom(patchwork,wrap_plots)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_int)
importFrom(purrr,partial)
importFrom(purrr,reduce)
importFrom(qcc,mqcc)
importFrom(readr,cols)
importFrom(readr,read_csv)
importFrom(reshape2,melt)
importFrom(rlang,"!!!")
importFrom(rlang,"!!")
importFrom(rlang,"%||%")
importFrom(rlang,":=")
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(rstatix,dunn_test)
importFrom(rstatix,games_howell_test)
importFrom(stats,TukeyHSD)
importFrom(stats,aov)
importFrom(stats,as.formula)
importFrom(stats,bartlett.test)
importFrom(stats,kruskal.test)
importFrom(stats,lm)
importFrom(stats,p.adjust)
importFrom(stats,shapiro.test)
importFrom(stringr,str_match)
importFrom(stringr,str_sub)
importFrom(stringr,str_to_lower)
importFrom(stringr,str_trim)
importFrom(tibble,column_to_rownames)
importFrom(tibble,remove_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(tidyr,separate_rows)
importFrom(tidyr,unite)
importFrom(tidyselect,all_of)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)