New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Copy new intercell related procedures from the R package #21

Open

deeenes opened this issue Apr 19, 2022 · 0 comments

Assignees

Labels

Member

deeenes commented Apr 19, 2022

I am just writing this as a note, and once @michalk8, me or someone else will have a little time, it would be great to implement these methods here.

Based on the experiences of working with cell-cell communication, we created these new solutions in OmnipathR:

Quality filters for the OmniPath intercell network, based on the amount and consensus of evidences, and the localization of proteins (here and here)
A shortcut to simply retrieve all curated ligand-receptor network resources almost without any modification (here)

deeenes added the enhancement label

michalk8 self-assigned this

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment