From 558cff8232fe2de88f70446a836ac817d8195bdb Mon Sep 17 00:00:00 2001 From: Sam Horsfield Date: Mon, 14 Oct 2024 12:19:08 +0100 Subject: [PATCH] Corrects issue with writing protein sequence --- panaroo_runner/generate_output.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/panaroo_runner/generate_output.py b/panaroo_runner/generate_output.py index b821c2a..5d02fdc 100644 --- a/panaroo_runner/generate_output.py +++ b/panaroo_runner/generate_output.py @@ -536,7 +536,7 @@ def output_alignment_sequence(node_pair, temp_directory, outdir, shd_arr_tup, OR # generate protein sequence. If refound, add found protein sequence from find_missing.py ORF_info = ORF_info_dict[colour][ORF_ID] if ORF_ID < 0: - protein = Seq(ORF_info[4]) + protein = Seq(ORF_info[5]) else: protein = Seq(shd_arr[0].generate_sequence(ORF_info[0], ORF_info[1], overlap)).translate()