From d25ea7d94c5f93ce56000fb1d2f1daf92115739e Mon Sep 17 00:00:00 2001 From: Daniel Cameron Date: Tue, 20 Jun 2023 22:51:57 +1000 Subject: [PATCH] #707 Clarified in change log that DPADJ, CNADJ and CICNADJ have been removed, not deprecated as their meaning was never unambiguous --- VCFv4.4.tex | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/VCFv4.4.tex b/VCFv4.4.tex index 85fcf3ec6..5e62456bd 100755 --- a/VCFv4.4.tex +++ b/VCFv4.4.tex @@ -2568,7 +2568,8 @@ \subsection{Changes between VCFv4.4 and VCFv4.3} \item Clarified CIPOS should be used to define micro-homology bounds \item Clarified INFO lines field ordering \item Clarified that symbolic and breakpoint notation ALT alleles are case sensitive. -\item Deprecated SVTYPE, DPADJ, CNADJ, CICNADJ +\item Deprecated SVTYPE +\item Removed DPADJ, CNADJ, CICNADJ \item Disallowed BND ALT records (these should use breakpoint notation anyway) \item Removed definition of DP from Section 3 as it was already defined in Section 1.6.1.8. \item Deprecated bundles in favour of PSL-based phasing.