From 37c8847673fbad7ddbf57ab9b92267297216a6d9 Mon Sep 17 00:00:00 2001 From: DLBPointon Date: Wed, 10 Jul 2024 13:19:33 +0100 Subject: [PATCH] Updates to Workflows --- .github/workflows/ci.yml | 4 ++-- assets/github_testing/test.yaml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5f6ee2c..5505fcc 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -80,9 +80,9 @@ jobs: run: | curl https://dp24.cog.sanger.ac.uk/blastn.tar.gz | tar xzf - - - name: Temporary ASCC Diamond Data + - name: Temporary Accession2TaxID Data run: | - curl https://dp24.cog.sanger.ac.uk/ascc/accession2taxid.tar.gz | tar -C accession2taxid -xzf - + curl https://dp24.cog.sanger.ac.uk/ascc/accession2taxid.tar.gz | tar -xzf - - name: Download the NCBI taxdump database run: | diff --git a/assets/github_testing/test.yaml b/assets/github_testing/test.yaml index a37718a..9c258fc 100755 --- a/assets/github_testing/test.yaml +++ b/assets/github_testing/test.yaml @@ -15,7 +15,7 @@ dimensionality_reduction_methods: "pca,random_trees" nt_database: /home/runner/work/ascc/ascc/blastdb/ nt_database_prefix: tiny_plasmodium_blastdb.fa nt_kraken_db_path: /home/runner/work/ascc/ascc/kraken2/kraken2 -ncbi_accessionids_folder: /home/runner/work/ascc/ascc/accession2taxid/ +ncbi_accessionids_folder: /home/runner/work/ascc/ascc/20240709_tiny_accession2taxid/ ncbi_taxonomy_path: /home/runner/work/ascc/ascc/ncbi_taxdump/ ncbi_rankedlineage_path: /home/runner/work/ascc/ascc/ncbi_taxdump/rankedlineage.dmp busco_lineages_folder: /home/runner/work/ascc/ascc/busco_database/lineages