From aeeabb093b9f5118ce5cb48f282bdc6bce92e201 Mon Sep 17 00:00:00 2001
From: DLBPointon <damonlbp@hotmail.co.uk>
Date: Tue, 27 Feb 2024 10:59:34 +0000
Subject: [PATCH] linting

---
 .github/workflows/ci.yml                              | 4 ++--
 modules/local/kmer_count_dim_reduction_combine_csv.nf | 3 ---
 2 files changed, 2 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 53ac0db..83d2195 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -24,7 +24,7 @@ jobs:
     strategy:
       matrix:
         NXF_VER:
-          - "22.10.1"
+          - "23.04.0"
           - "latest-everything"
     steps:
       - name: Check out pipeline code
@@ -82,7 +82,7 @@ jobs:
       - name: Download the vecscreen test data
         run: |
           mkdir vecscreen
-          curl -L https://ftp.ncbi.nlm.nih.gov/blast/db/v4/16SMicrobial_v4.tar.gz | tar -C vecscreen -xzf -
+          wget -c https://tolit.cog.sanger.ac.uk/test-data/resources/vecscreen/GCA_900155405.1_PRJEB18760_genomic.fna -O vecscreen/GCA_900155405.1_PRJEB18760_genomic.fna
 
       - name: Run pipeline with test data
         # TODO nf-core: You can customise CI pipeline run tests as required
diff --git a/modules/local/kmer_count_dim_reduction_combine_csv.nf b/modules/local/kmer_count_dim_reduction_combine_csv.nf
index 9aeabfe..cdd2d00 100755
--- a/modules/local/kmer_count_dim_reduction_combine_csv.nf
+++ b/modules/local/kmer_count_dim_reduction_combine_csv.nf
@@ -1,5 +1,4 @@
 process KMER_COUNT_DIM_REDUCTION_COMBINE_CSV {
-
     tag "$meta.id"
     label 'process_low'
 
@@ -20,12 +19,10 @@ process KMER_COUNT_DIM_REDUCTION_COMBINE_CSV {
 
     script:
     def prefix = args.ext.prefix ?: "${meta.id}"
-    
     """
     kmer_count_dim_reduction_combine_csv.py \\
         -o ${prefix}_kmers_dim_reduction_embeddings_combined.csv \\
         -i $input_files
-        
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":