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DPL-404 As GSU (Alan K) I would like to mark the incorrectly uploaded Randox plate maps with incorrect Root_Sample_IDs as consent withdrawn so that CoTrack reporting will ignore them. #546

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Jonnie-Bevan opened this issue Mar 23, 2022 · 0 comments
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Data integrity data fix Enhancement New feature or request GSU Delivers work for the GSU unit Heron

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@Jonnie-Bevan
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Jonnie-Bevan commented Mar 23, 2022

A data fix requested by PAM, first priority from this list.

Description
Randox uploaded incorrect plate maps in June 2021. As such the root sample ID associated with these samples is incorrect.
Ideally these should be marked as withdrawn in the MLWH database (lighthouse_sample table). They should also be dealt with in the MongoDB and any other databases/tables they may appear in (the MLWH sample table, SequenceScape, Events Warehouse).
The incorrect IDs can be requested from Alan K.
There is a chance these samples were picked and sequenced, and if so it may be needed to get NPG involved.
This samples should not be removed, instead we will set the flag for consent withdrawn

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Alan K

@Jonnie-Bevan Jonnie-Bevan added Enhancement New feature or request Data integrity data fix labels Mar 23, 2022
@TWJW-SANGER TWJW-SANGER changed the title DPL-nnn - 1 - Randox uploaded incorrect plate maps (incorrect Root_Sample_IDs) DPL- 404 As GSU (Alan K) I would like to mark the incorrectly uploaded Randox plate maps with incorrect Root_Sample_IDs as consent withdrawn so that CoTrack reporting will ignore them. Jun 1, 2022
@sdjmchattie sdjmchattie changed the title DPL- 404 As GSU (Alan K) I would like to mark the incorrectly uploaded Randox plate maps with incorrect Root_Sample_IDs as consent withdrawn so that CoTrack reporting will ignore them. DPL-404 As GSU (Alan K) I would like to mark the incorrectly uploaded Randox plate maps with incorrect Root_Sample_IDs as consent withdrawn so that CoTrack reporting will ignore them. Aug 24, 2022
@TWJW-SANGER TWJW-SANGER added the GSU Delivers work for the GSU unit label Sep 28, 2022
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Labels
Data integrity data fix Enhancement New feature or request GSU Delivers work for the GSU unit Heron
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