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Y24-178 - Modify cDNA Prep submission #1768

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KatyTaylor opened this issue Jul 4, 2024 · 0 comments · Fixed by #1802 or sanger/sequencescape#4222
Closed
3 tasks

Y24-178 - Modify cDNA Prep submission #1768

KatyTaylor opened this issue Jul 4, 2024 · 0 comments · Fixed by #1802 or sanger/sequencescape#4222
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Enhancement New feature or request scRNA - cDNA prep scRNA Size: S Small - low effort & risk

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@KatyTaylor
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Description
We discussed the names of all the submission templates and library types in a meeting with Abby & Liz.

The cDNA Prep submission template is currently called Limber-Htp - scRNA Core cDNA Prep. All samples will currently use the GEM-X 5p route, however in future more variants might be available e.g. HT chip, or 3p chemistry.

The submission currently accepts a library type, which includes the 'GEM-X 5p' information.

We would like to get rid of the library type at this step, because:
a) We are not making libraries here, just cDNA. Libraries are made later.
b) This stage and the library prep stage were both originally using a library type called Chromium single cell 5 prime GEM-X. We updated this name for the library prep stage to include GE for gene expression - because it was implied anyway - it's needed to distinguish from potential future 'TCR' and 'BCR' variants.

However, if we get rid of the library type, we'll have to include that 'GEM-X 5p' information in the submission template / request type instead, so Limber knows which route it's going down.

Who are the primary contacts for this story
Katy, Andrew, Abby, Liz H

Who is the nominated tester for UAT
Abby (R&D), Liz H (SSR)

Acceptance criteria
To be considered successful the solution must allow:

  • cDNA Prep submission template / pipeline does not expect a library type
  • cDNA Prep submission template is called Limber-Htp - scRNA Core cDNA Prep GEM-X 5p
  • Request type is changed accordingly
@KatyTaylor KatyTaylor added Size: S Small - low effort & risk scRNA scRNA - cDNA prep labels Jul 4, 2024
@psd-issuer psd-issuer bot changed the title Modify cDNA Prep submission Y24-178 - Modify cDNA Prep submission Jul 4, 2024
@SujitDey2022 SujitDey2022 added the Enhancement New feature or request label Jul 4, 2024
@BenTopping BenTopping self-assigned this Jul 22, 2024
@BenTopping BenTopping linked a pull request Jul 23, 2024 that will close this issue
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Labels
Enhancement New feature or request scRNA - cDNA prep scRNA Size: S Small - low effort & risk
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