Y25-009 - [BUG] Requests not being passed automatically (GEMs input)

[KatyTaylor]

Describe the bug
In the scRNA Core pipeline (entrypoint starting with GEMs plate), the library prep (GEMS input) requests are not being successfully passed. This then causes a problem on the first step of the aggregation pipeline, as in FreshService ticket https://sanger.freshservice.com/a/tickets/18528?current_tab=details This is likely because the purpose config refers to old request type name - it was not updated during #2027.

See config > purposes > scrna_core_cdna_prep.yml, purpose LRC GEM-X 5p cDNA PCR XP, work_completion_request_type - limber_scrna_core_cdna_prep_gem_x_5p_pbmc_pools_input is out of date, should be limber_scrna_core_cdna_prep_gem_x_5p_gems_input.

RT Ticket Number
If applicable

Tasks:

• Update the purpose config to have the correct request type name
• Modify the integration suite test for this entrypoint to add the aggregation pipeline onto the end (currently it just does the library prep part). (Could do this first for test-driven development)