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Inplace subsetting of an anndata object does not update obsm or varm. They updated anndata objects gets new AxisArrays objects (with the correct shape), but the old objects don't get updated and even if they are still referencing the updated anndata object.
Inplace subsetting of an anndata object does not update obsm or varm. They updated anndata objects gets new AxisArrays objects (with the correct shape), but the old objects don't get updated and even if they are still referencing the updated anndata object.
Originally posted by @ivirshup in #363
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