diff --git a/docs/release-notes/0.11.0.md b/docs/release-notes/0.11.0.md deleted file mode 100644 index abbdb99fd..000000000 --- a/docs/release-notes/0.11.0.md +++ /dev/null @@ -1,23 +0,0 @@ -(v0.11.0)= -### 0.11.0 {small}`the future` - -#### Features - -* Allow `axis` parameter of e.g. :func:`anndata.concat` to accept `'obs'` and `'var` {pr}`1244` {user}`flying-sheep` -* Add `settings` object with methods for altering internally-used options, like checking for uniqueness on `obs`' index {pr}`1270` {user}`ilan-gold` -* `scipy.sparse.csr_array` and `scipy.sparse.csc_array` are now supported when constructing `AnnData` objects {pr}`1028` {user}`ilan-gold` {user}`isaac-virshup` -* Add {attr}`~anndata.settings.should_remove_unused_categories` option to {attr}`anndata.settings` to override current behavior {pr}`1340` {user}`ilan-gold` -* Add {attr}`~anndata.settings.should_check_uniqueness` option to {attr}`anndata.settings` to override current behavior {pr}`1507` {user}`ilan-gold` -* Add :func:`~anndata.experimental.read_elem_as_dask` function to handle i/o with sparse and dense arrays {pr}`1469` {user}`ilan-gold` -* Add functionality to write from GPU {class}`dask.array.Array` to disk {pr}`1550` {user}`ilan-gold` -* Add ability to convert strings to categoricals on write in {meth}`~anndata.AnnData.write_h5ad` and {meth}`~anndata.AnnData.write_zarr` via `convert_strings_to_categoricals` parameter {pr}`1474` {user}` falexwolf` - -#### Bugfix - -#### Documentation - -#### Performance - -#### Breaking - -* Removed deprecated modules `anndata.core` and `anndata.readwrite` {pr}`1197` {user}`ivirshup` diff --git a/docs/release-notes/1028.feature.md b/docs/release-notes/1028.feature.md new file mode 100644 index 000000000..8b2f612f9 --- /dev/null +++ b/docs/release-notes/1028.feature.md @@ -0,0 +1 @@ +`scipy.sparse.csr_array` and `scipy.sparse.csc_array` are now supported when constructing `AnnData` objects {user}`ilan-gold` {user}`isaac-virshup` diff --git a/docs/release-notes/1197.breaking.md b/docs/release-notes/1197.breaking.md new file mode 100644 index 000000000..165e712cc --- /dev/null +++ b/docs/release-notes/1197.breaking.md @@ -0,0 +1 @@ +Removed deprecated modules `anndata.core` and `anndata.readwrite` {user}`ivirshup` diff --git a/docs/release-notes/1244.feature.md b/docs/release-notes/1244.feature.md new file mode 100644 index 000000000..9a0fd6c30 --- /dev/null +++ b/docs/release-notes/1244.feature.md @@ -0,0 +1 @@ +Allow `axis` parameter of e.g. :func:`anndata.concat` to accept `'obs'` and `'var'` {user}`flying-sheep` diff --git a/docs/release-notes/1270.feature.md b/docs/release-notes/1270.feature.md new file mode 100644 index 000000000..89f07264c --- /dev/null +++ b/docs/release-notes/1270.feature.md @@ -0,0 +1 @@ +Add `settings` object with methods for altering internally-used options, like checking for uniqueness on `obs`' index {user}`ilan-gold` diff --git a/docs/release-notes/1340.feature.md b/docs/release-notes/1340.feature.md new file mode 100644 index 000000000..8991d630f --- /dev/null +++ b/docs/release-notes/1340.feature.md @@ -0,0 +1 @@ +Add {attr}`~anndata.settings.should_remove_unused_categories` option to {attr}`anndata.settings` to override current behavior {user}`ilan-gold` diff --git a/docs/release-notes/1469.feature.md b/docs/release-notes/1469.feature.md new file mode 100644 index 000000000..abe84f7f6 --- /dev/null +++ b/docs/release-notes/1469.feature.md @@ -0,0 +1 @@ +Add :func:`~anndata.experimental.read_elem_as_dask` function to handle i/o with sparse and dense arrays {user}`ilan-gold` diff --git a/docs/release-notes/1474.feature.md b/docs/release-notes/1474.feature.md new file mode 100644 index 000000000..9c85d982f --- /dev/null +++ b/docs/release-notes/1474.feature.md @@ -0,0 +1 @@ +Add ability to convert strings to categoricals on write in {meth}`~anndata.AnnData.write_h5ad` and {meth}`~anndata.AnnData.write_zarr` via `convert_strings_to_categoricals` parameter {user}` falexwolf` diff --git a/docs/release-notes/1507.feature.md b/docs/release-notes/1507.feature.md new file mode 100644 index 000000000..13c6224ef --- /dev/null +++ b/docs/release-notes/1507.feature.md @@ -0,0 +1 @@ +Add {attr}`~anndata.settings.should_check_uniqueness` option to {attr}`anndata.settings` to override current behavior {user}`ilan-gold` diff --git a/docs/release-notes/1550.feature.md b/docs/release-notes/1550.feature.md new file mode 100644 index 000000000..bd1bfd37d --- /dev/null +++ b/docs/release-notes/1550.feature.md @@ -0,0 +1 @@ +Add functionality to write from GPU {class}`dask.array.Array` to disk {user}`ilan-gold` diff --git a/pyproject.toml b/pyproject.toml index 2931d7ff6..11ba0b2ea 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -210,3 +210,6 @@ title_format = "(v{version})=\n### {version} {{small}}`{project_date}`" [tool.towncrier.fragment.performance] name = "Performance" + +[tool.towncrier.fragment.breaking] +name = "Breaking"