From d02441550ec0df596db2432652adccc13aca21bb Mon Sep 17 00:00:00 2001
From: Chananchida Sang-aram VSCODE <sai.chananchida@gmail.com>
Date: Tue, 19 Sep 2023 11:22:23 +0200
Subject: [PATCH] minor documentation changes

---
 R/Seurat.R    | 6 +-----
 man/Seurat.Rd | 5 ++---
 2 files changed, 3 insertions(+), 8 deletions(-)

diff --git a/R/Seurat.R b/R/Seurat.R
index 694f605d..cc8bc76f 100644
--- a/R/Seurat.R
+++ b/R/Seurat.R
@@ -109,9 +109,8 @@ to_Seurat <- function(obj) { # nolint
 #' @param seurat_obj An object inheriting from Seurat.
 #' @param output_class Name of the AnnData class. Must be one of `"HDF5AnnData"` or `"InMemoryAnnData"`.
 #' @param assay Assay to be converted. If NULL, `DefaultAssay()` is used.
-#' @param X Which of 'counts', 'data', or 'scale.data' will be used for X. By default, 'counts' will be used (if it is not empty', followed by 'data', then 'scale.data'. The remaining non-empty slots will be stored in different layers.
+#' @param X Which of 'counts', 'data', or 'scale.data' will be used for X. By default, 'counts' will be used (if it is not empty), followed by 'data', then 'scale.data'. The remaining non-empty slots will be stored in different layers.
 #' @param ... Additional arguments passed to the generator function.
-#' See the "Details" section for more information on which parameters
 #'
 #' @export
 # TODO: add tests with Seurat objects not created by anndataR
@@ -173,9 +172,6 @@ from_Seurat <- function(seurat_obj, output_class = c("InMemoryAnnData", "HDF5Ann
     ...
   )
 
-  # trackstatus: class=Seurat, feature=set_X, status=wip
-  # trackstatus: class=Seurat, feature=set_layers, status=wip
-
   if (!is.null(X)) {
     slots_priority <- c("counts", "data", "scale.data")
 
diff --git a/man/Seurat.Rd b/man/Seurat.Rd
index 984aa12c..c8373de1 100644
--- a/man/Seurat.Rd
+++ b/man/Seurat.Rd
@@ -24,10 +24,9 @@ from_Seurat(
 
 \item{assay}{Assay to be converted. If NULL, \code{DefaultAssay()} is used.}
 
-\item{X}{Which of 'counts', 'data', or 'scale.data' will be used for X. By default, 'counts' will be used (if it is not empty', followed by 'data', then 'scale.data'. The remaining non-empty slots will be stored in different layers.}
+\item{X}{Which of 'counts', 'data', or 'scale.data' will be used for X. By default, 'counts' will be used (if it is not empty), followed by 'data', then 'scale.data'. The remaining non-empty slots will be stored in different layers.}
 
-\item{...}{Additional arguments passed to the generator function.
-See the "Details" section for more information on which parameters}
+\item{...}{Additional arguments passed to the generator function.}
 }
 \description{
 \code{to_Seurat()} converts an AnnData object to a Seurat object.