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Error accessing X in HDF5AnnData when empty #164

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lazappi opened this issue Dec 6, 2023 · 0 comments
Open

Error accessing X in HDF5AnnData when empty #164

lazappi opened this issue Dec 6, 2023 · 0 comments
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@lazappi
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lazappi commented Dec 6, 2023

If the X slot in an HDF5AnnData is empty, trying to access it gives this error:

Error in rhdf5::h5readAttributes(file, name) : 
  Object /X does not exist in this HDF5 file.

Needs to be handled in some way. Should probably be filled in the same way as Python when creating a new H5AD file.
@lazappi lazappi added the bug Something isn't working label Dec 6, 2023
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