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Feature Request: Increase flexibility of to_Seurat #165

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JohnMMa opened this issue Jan 25, 2024 · 1 comment
Open

Feature Request: Increase flexibility of to_Seurat #165

JohnMMa opened this issue Jan 25, 2024 · 1 comment

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@JohnMMa
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JohnMMa commented Jan 25, 2024

I realized one thing: currently, to_Seurat will always write the expression to the assay of 'RNA'. I wonder if devs may add an option so that we can customize the assay the expression to be written to? We often do pure CITE-seq experiments, which means output from that usage should be in the assay of 'ADT'--which means an entire new Seurat object needs to be created to carry on the assay data because the assays' names of Seurat objects cannot be directly modified.

@rcannood
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rcannood commented Nov 5, 2024

#183 tries to address this issue. @JohnMMa Would the proposed changes work for you?

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