diff --git a/src/spatialdata_io/readers/visium_hd.py b/src/spatialdata_io/readers/visium_hd.py index f94909f..b5fe990 100644 --- a/src/spatialdata_io/readers/visium_hd.py +++ b/src/spatialdata_io/readers/visium_hd.py @@ -42,9 +42,9 @@ def visium_hd( filtered_counts_file: bool = True, bin_size: int | list[int] | None = None, bins_as_squares: bool = True, + annotate_table_by_labels: bool = False, fullres_image_file: str | Path | None = None, load_all_images: bool = False, - annotate_table_by_labels: bool = False, imread_kwargs: Mapping[str, Any] = MappingProxyType({}), image_models_kwargs: Mapping[str, Any] = MappingProxyType({}), anndata_kwargs: Mapping[str, Any] = MappingProxyType({}), @@ -71,14 +71,14 @@ def visium_hd( bins_as_squares If `True`, the bins are represented as squares. If `False`, the bins are represented as circles. For a correct visualization one should use squares. + annotate_table_by_labels + If `True` will annotate the table with corresponding labels layer representing the bins, if `False`, table will be annotated by a shapes layer. fullres_image_file Path to the full-resolution image. By default the image is searched in the ``{vx.MICROSCOPE_IMAGE!r}`` directory. load_all_images If `False`, load only the full resolution, high resolution and low resolution images. If `True`, also the following images: ``{vx.IMAGE_CYTASSIST!r}``. - annotate_table_by_labels - If `True` will annotate the table with corresponding labels layer representing the bins, if `False`, table will be annotated by a shapes layer. imread_kwargs Keyword arguments for :func:`imageio.imread`. image_models_kwargs