From fa1fe686eaeaaeb091a2d71999d5c412c33a9e50 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Sun, 20 Aug 2023 22:54:04 +0000 Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- src/spatialdata_io/readers/stereoseq.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/src/spatialdata_io/readers/stereoseq.py b/src/spatialdata_io/readers/stereoseq.py index 031532a1..2b4b9ab4 100644 --- a/src/spatialdata_io/readers/stereoseq.py +++ b/src/spatialdata_io/readers/stereoseq.py @@ -60,7 +60,7 @@ def stereoseq( if gef_files: first_gef_file = gef_files[0] - dataset_id = first_gef_file.split('.')[0] + dataset_id = first_gef_file.split(".")[0] image_patterns = [ re.compile(r".*" + re.escape(StereoseqKeys.MASK_TIF)), @@ -155,12 +155,12 @@ def stereoseq( # add all leftover columns in cellbin which don't fit .obs or .var to uns cellbin_uns = { - "geneID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP][StereoseqKeys.GENE_ID][:], + "geneID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP][StereoseqKeys.GENE_ID][:], "cellExp": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP][StereoseqKeys.COUNT][:], - "cellExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP_EXON][:], - "cellID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.CELL_ID][:], - "geneExp": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.COUNT][:], - "geneExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP_EXON][:], + "cellExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.CELL_EXP_EXON][:], + "cellID": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.CELL_ID][:], + "geneExp": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP][StereoseqKeys.COUNT][:], + "geneExpExon": cellbin_gef[StereoseqKeys.CELL_BIN][StereoseqKeys.GENE_EXP_EXON][:], } cellbin_uns_df = pd.DataFrame(cellbin_uns)