mkdocs.yml

site_name: SIBiLS
site_description: Swiss Institute of Bioinformatics Literature Services
site_url: https://sibils.text-analytics.ch/
repo_url: https://github.com/sibils/
repo_name: github.com/sibils/
markdown_extensions:
  - abbr
  - attr_list
  - md_in_html
  - admonition
  - tables
  - footnotes
  - def_list
  - pymdownx.tasklist:
      custom_checkbox: true
  - pymdownx.tabbed:
      alternate_style: true
  - pymdownx.emoji:
      emoji_index: !!python/name:materialx.emoji.twemoji
      emoji_generator: !!python/name:materialx.emoji.to_svg
  - pymdownx.superfences:
      custom_fences:
        - name: mermaid
          class: mermaid
          format: !!python/name:pymdownx.superfences.fence_code_format
theme:
  name: material
  palette:
    scheme: sibils
  logo: assets/sib.png
  custom_dir: overrides
  locale: en
  include_sidebar: false
  font: false
  features:
    - navigation.tabs
    - navigation.indexes
    - content.code.copy       # ajouter un bouton "copier" à droite dans les blocs de code
extra_css:
  - assets/extra.css

#### nav section ####
nav:
  - Quick Start: 'index.md'
  - Collections:
    - 'SIBiLS collections': 'doc/collections/sibils_collections.md'
    - 'upload publications in SIBiLS': 'doc/collections/how_to_upload.md'
  - Vocabularies: 'doc/vocabularies.md'
  - Videos: 'doc/videos.md'
  - API:
    - 'fetch': 'doc/api/fetch.md'
    - 'search': 'doc/api/search.md'
    - 'qa': 'doc/api/qa.md'
    - 'SPARQL': 'doc/api/sparql.md'
  - 'SAB': 'doc/sab.md'
  - 'BiodiversityPMC': search/