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<!DOCTYPE html>
<html lang="en">
<head>
<title>Simon Thelwall</title>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width,
initial-scale=1">
<!--[if lt IE 9]>
<script src="files/html5shiv.js"></script>
<![endif]-->
<link rel="stylesheet" type="text/css" href="css/cv.css"/>
</head>
<body>
<header role="banner">
<h1>Simon Thelwall, BSc, MSc, PhD</h1>
<nav role="navigation">
<!-- <ul>
<li><a href="/">home</a></li>
<li><a href="/">contact</a></li>
<li><a href="/">education</a></li>
<li><a href="/">career history</a></li>
-->
<section id="education" class="small">
<h2>Education</h2><br><br>
<dl>
<ul id="menu"><li id="degree">MSc Epidemiology</li><li id="years">2012-2014</li></ul><br>
<dd>London School of Hygiene and Tropical medicine</dd><br>
<ul id="menu"><li id="degree">PhD Biochemistry</li><li id="years">2001-2005</li></ul><br>
<dd>‘The Properties of 4.1G: Localisation, Interactions and Evolution‘</dd>
<dd>University of Kent</dd><br>
<ul id="menu"><li id="degree">BSc Biomedical Science (Hons), 2:1</li><li id="years">1997-2000</li></ul><br>
<dd>Nottingham Trent University</dd>
</dl>
</section>
<section id="employment">
<h2>Career history</h2><br><br>
<dl>
<ul id="menu">
<li id="degree">Lead epidemiologist (uG7)</li>
<li> <i>UK Health Security Agency</i> </li>
<li id="years">Feb 2023 to date</li>
</ul><br>
<dd id="resposibility">Building and leading team of data scientists within the HCAI & AMR division</dd>
<dd id="resposibility">Leading the data analytics and epidemiology cell for a standard response to an HCAI outbreak</dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Joint lead epidemiologist (G6)</li>
<li> <i>Public Health England/UK Health Security Agency</i> </li>
<li id="years">Feb 2021-Feb 2023</li>
</ul><br>
<dd id="resposibility">Led a team of six epidemiologists to monitor cases and variants of SARS-CoV-2</dd>
<dd id="resposibility">Directed the assessment of relative severity of SARS-CoV-2 variants</dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Senior scientist (epidemiology)</li>
<li> <i>Public Health England</i> </li>
<li id="years">Feb 2018-Feb 2021</li>
</ul><br>
<dd id="resposibility">Senior scientist in mandatory bacteraemia team</dd>
<dd id="resposibility">Line manager for three scientists</dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Senior scientist (epidemiology)</li>
<li> <i>Public Health England</i> </li>
<li id="years">2015-Feb 2018</li>
</ul><br>
<dd id="resposibility">Prepared annual report for mandatory surveillance</dd>
<dd id="resposibility">Analysed data on relationship between Index of Multiple Deprivation and <it>C. difficile</it> infection by Clinical Commissioning Group</dd>
<dd id="resposibility">Prepared monthly outputs for mandatory surveillance</dd>
<dd id="resposibility">Developed HCAI indicators for <a href="http://fingertips.phe.org.uk/">PHE fingertips</a></dd>
<dd id="resposibility">Developed R package for working with data from <a href="https://hcaidcs.phe.org.uk/">HCAI DCS</a></dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Scientist (epidemiology)</li>
<li> <i>Public Health England</i> </li>
<li id="years">2012-2015</li>
</ul><br>
<dd id="resposibility">Collected and submitted UK data for Europe-wide antimicrobial resistance surveillance.</dd>
<dd id="resposibility">Led project to redevelop collection of UK antimicrobial resistance data for European surveillance.</dd>
<dd id="resposibility">Analysed data for the English point prevalence survey of health care associated infection and antimicrobial usage.</dd>
<dd id="resposibility">Lectured students studying for Masters in Public Health.</dd>
<dd id="resposibility">Prepared annual reports on bacterial organisms causing bloodstream infections.</dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Information Officer</li>
<li> <i>Public Health England</i> </li>
<li id="years">2009-2012</li>
</ul><br>
<dd id="resposibility">Analysed data for surgical site infection surveillance.</dd>
<dd id="resposibility">Ensured timely and accurate submission of data by hospital staff.</dd>
<dd id="resposibility">Delivered surveillance training to clinicians.</dd>
<dd id="resposibility">Assisted with production of SSI annual report.</dd>
<dd id="resposibility">Prepared annual reports on uncommon bacterial pathogens causing bloodstream infections.</dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Medical Information Officer</li>
<li> <i>NHS Direct</i> </li>
<li id="years">2007-2009</li>
</ul><br>
<dd id="resposibility">Prepared health information in response to enquiries received from the public, via the web.</dd>
<dd id="resposibility">Prepared and delivered training to colleagues.</dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Cheminformatician</li>
<li> <i>GlaxoSmithKline</i> </li>
<li id="years">2005-2006</li>
</ul><br>
<dd id="resposibility">Developed text mining approach to extracting pharmacokinetic and toxicology data from documents.</dd>
<dd id="resposibility">Analysed drug attrition from compound identification to clinical trials.</dd>
</dl><br>
<dl>
<ul id="menu">
<li id="degree">Research Assistant</li>
<li> <i>CeNeS Pharmaceutials Plc</i> </li>
<li id="years">2000-2001</li>
</ul><br>
<dd id="resposibility">Performed safety pharmacology testing on candidate drugs.</dd>
<dd id="resposibility">Analysed data and prepared reports for customers.</dd>
</dl>
</section>
<section id="tech_skills">
<h2>Technical skills</h2><br><br>
<ul id="menu">
<li>R,</li>
<li>Stata,</li>
<li>SQL,</li>
<li>LaTeX,</li>
<li>version control with Git,</li>
<li>Ruby.</li>
</ul>
</section>
<section id="interests">
<h2>Other interests</h2><br><br>
<p>I participate in Parkrun; volunteering or running most weeks. I am interested in photography and enjoy both digital and film photography.</p>
</section>
<section id="papers">
<h2>Papers, reports and presentations</h2><br><br>
<ul id="reference">
<li id="authors">Johnson, A. P., Muller-Pebody, B., Budd, E., Ashiru-Oredope, D., Ladenheim, D., Hain, D., Hope, R., Bhattacharya, A., Elgohari, S., Guy, R., Henderson, K., Puleston, R., Rooney, G., Thelwall, S., Wellington, E., Lamagni, T., Hopkins, S.<li>
<li id="title">Improving feedback of surveillance data on antimicrobial consumption, resistance and stewardship in England: putting the data at your Fingertips<li>
<li id="citation">JAC, 2016<li>
<li id="link"><a href="http://jac.oxfordjournals.org/content/early/2016/12/02/jac.dkw536.short">http://jac.oxfordjournals.org/content/early/2016/12/02/jac.dkw536.short</a><li>
</ul><br><br>
<ul id="reference">
<li id="authors">Thelwall, S., Nsonwu, O., Wasti, S., Elmi, M., Gerver, S., Davies, J., Hope, R.<li>
<li id="title">Annual Epidemiological Commentary Mandatory MRSA, MSSA and E. coli bacteraemia and C. difficile infection data 2015/16<li>
<li id="citation">PHE, 2016<li>
<li id="link"><a href="https://www.gov.uk/government/uploads/system/uploads/attachment_data/file/535635/AEC_final.pdf">gov.uk</a><li>
</ul><br><br>
<ul id="reference">
<li id="authors">Thelwall, S., Harrington, P., Sheridan, E., Lamagni, T.<li>
<li id="title">Impact of obesity on the risk of wound infection following surgery: results from a nationwide prospective multicentre cohort study in England<li>
<li id="citation">CMI, 2015<li>
<li id="link"><a href="http://dx.doi.org/10.1016/j.cmi.2015.07.003">http://dx.doi.org/10.1016/j.cmi.2015.07.003</a><li>
<li id="repo"> <li>
</ul><br><br>
<ul id="reference">
<li id="authors">Green, N., Johnson, A. P., Henderson, K. L., Muller-Pebody, B., Thelwall, S., Robotham, J. V., Sharland, M., Wolkewitz, M. and Deeny, S. R.<li>
<li id="title">Quantifying the burden of hospital-acquired bloodstream infection in children in England by estimating excess length of hospital stay and mortality using a multistate analysis of linked, routinely collected data<li>
<li id="citation">JPIDS, 2014<li>
<li id="link"><a href="http://jpids.oxfordjournals.org/content/early/2014/07/21/jpids.piu073.abstract">http://jpids.oxfordjournals.org/content/early/2014/07/21/jpids.piu073.abstract</a><li>
<li id="repo"> <li>
</ul><br><br>
<ul id="reference">
<li id="authors">Thelwall, S., Elgohari, S., Harrington, P., Wloch, C., Sheridan, E., Lamagni, T.</li>
<li id="title">Burden of surgical site infection in English hospitals in the 21st Century</li>
<li id="citation">Health Protection, 2011</li>
<li id="link"></li>
<li id="repo"></li>
</ul><br><br>
<ul id="reference">
<li id="authors">Thelwall, S., Elgohari, S., Wloch, C., Sheridan, E.A., Harrington, P., Lamagni, T.</li>
<li id="title">Body Mass Index as a risk factor for Surgical Site Infection: The size of the problem.</li>
<li id="citation">European Congress of Clinical Microbiology and Infectious Diseases, 2012</li>
<li id="link"></li>
<li id="repo"></li>
</ul><br><br>
<ul id="reference">
<li id="authors">Thelwall, S., Guy, R., Henderson, K. L., Murray, M. L., Sharland, M., Muller-Pebody, B., Johnson, A.</li>
<li id="title">Trends in the antibiotic susceptibilities of <i>Haemophilus influenzae</i>, <i>Streptococcus pneumoniae</i> and <i>Staphylococcus aureus</i> from respiratory isolates in England, Wales and Northern Ireland, 2008-2013</li>
<li id="citation">Federation of Infection Societies, 2013</li>
<li id="link"><a href="https://www.researchgate.net/publication/268733310_Trends_in_the_antibiotic_susceptibilities_of_Haemophilus_influenzae_Streptococcus_pneumoniae_and_Staphylococcus_aureus_from_respiratory_isolates_in_England_Wales_and_Northern_Ireland_2008-2013">Poster available at ResearchGate</a></li>
<li id="repo"><a href="https://github.com/simonthelwall/fis2013">github:fis2013</a></li>
</ul><br><br>
<ul id="reference">
<li id="authors">Thelwall, S., Davies, J., Johnson, A., Hope, R.</li>
<li id="title">Local-area socioeconomic status is associated with Clostridium difficile infection rates</li>
<li id="citation">European Congress of Clinical Microbiology and Infectious Diseases, 2017</li>
<li id="link"></li>
<li id="repo"></li>
</ul><br><br>
<ul id="reference">
<li id="authors"></li>
<li id="title"></li>
<li id="citation"></li>
<li id="link"></li>
<li id="repo"></li>
</ul><br><br>
</section>
<section id="packages">
<h2>R packages</h2><br><br>
<ul id="package">
<li id="pkg-nm"><b>fingertipsR</b></li>
<li id="desc"><p>Package to interact with the PHE <a href="https://fingertips.phe.org.uk/">fingertips</a> website API</p></li>
<li id="github-link"><a href="http://github.com/ropensci/fingertipsR/">github</a></li>
<li id="travis"><a href="https://travis-ci.org/ropensci/fingertipsR" rel="nofollow"><img src="https://camo.githubusercontent.com/91fbf633b4c0b3789bb2adc5b237c1545b9554e9/68747470733a2f2f7472617669732d63692e6f72672f726f70656e7363692f66696e67657274697073522e737667" alt="Build Status" data-canonical-src="https://travis-ci.org/ropensci/fingertipsR.svg" style="max-width:100%;"></a></li>
<li id="codecov"><a href="https://coveralls.io/github/ropensci/fingertipsR?branch=master" rel="nofollow"><img src="https://camo.githubusercontent.com/58ba0f9301185e0e9564a41f5bb40efade40db33/68747470733a2f2f636f766572616c6c732e696f2f7265706f732f6769746875622f726f70656e7363692f66696e67657274697073522f62616467652e7376673f6272616e63683d6d6173746572" alt="Coverage Status" data-canonical-src="https://coveralls.io/repos/github/ropensci/fingertipsR/badge.svg?branch=master" style="max-width:100%;"></a></li>
</ul><br><br>
<ul id="package">
<li id="pkg-nm"><b>nicethings</b></li>
<li id="desc"><p>Collection of useful functions and functions for inline text in Rmarkdown</p></li>
<li id="github-link"><a href="https://github.com/simonthelwall/nicethings">github</a></li>
<li id="travis"><a href="https://travis-ci.org/" rel="nofollow"><img src="https://camo.githubusercontent.com/bd2c04d4600e36e3955e2e54bc8c783564cd3bae/68747470733a2f2f7472617669732d63692e6f72672f73696d6f6e7468656c77616c6c2f6e6963657468696e67732e7376673f6272616e63683d6d6173746572" alt="Travis-CI Build Status" data-canonical-src="https://travis-ci.org/simonthelwall/nicethings.svg?branch=master" style="max-width:100%;"></a></li>
<li id="codecov"><a href="https://codecov.io/gh/simonthelwall/nicethings" rel="nofollow"><img src="https://camo.githubusercontent.com/0e3dc68abcc9a2d75b68bb9ff4c3ab9094f7e93a/68747470733a2f2f636f6465636f762e696f2f67682f73696d6f6e7468656c77616c6c2f6e6963657468696e67732f6272616e63682f6d61737465722f67726170682f62616467652e737667" alt="codecov" data-canonical-src="https://codecov.io/gh/simonthelwall/nicethings/branch/master/graph/badge.svg" style="max-width:100%;"></a></li>
<li id="Documentation"><a href="https://simonthelwall.github.io/nicethings/">Documentation/</a></li>
</ul><br><br>
<ul id="package">
<li id="pkg-nm"><b>hcaidcs</b></li>
<li id="desc"><p>Package for working with line listing data from PHE's <a href="https://hcaidcs.phe.org.uk/WebPages/GeneralHomePage.aspx">HCAI Data Capture System</a></p></li>
<li id="github-link"><a href="https://github.com/publichealthengland/hcaidcs">github</a></li>
<li id="travis"><a href="#" id="status-image-popup" title="Latest push build on default branch: " name="status-images" class="open-popup" data-ember-action="" data-ember-action-1126="1126"><img src="https://travis-ci.org/PublicHealthEngland/hcaidcs.svg?branch=master" alt="build:"></li>
<li id="codecov"><a href="https://codecov.io/gh/PublicHealthEngland/hcaidcs">
<img src="https://codecov.io/gh/PublicHealthEngland/hcaidcs/branch/master/graph/badge.svg" />
</a></li>
<li id="Documentation"><a href="https://publichealthengland.github.io/hcaidcs/">Documentation</a></li>
</ul><br><br>
<ul id="package">
<li id="pkg-nm"><b>episheet</b></li>
<li id="desc"><p>Package to replicate Ken Rothman's <a href="http://krothman.org/Episheet.xls">Excel episheet</a></p></li>
<li id="github-link"><a href="https://github.com/epijim/episheet">github</a></li>
<li id="travis"><img src="https://travis-ci.org/epijim/episheet.svg?branch=master" alt="Badge"></li>
<li id="CRAN"><img src="http://www.r-pkg.org/badges/version/episheet" alt="Badge"></li>
</ul><br><br>
</section>
<a href = "http://simonthelwall.github.io/r_notes"><programming notes>
</body>