diff --git a/docs/usage.md b/docs/usage.md index 46b3f59..588c1d3 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -128,11 +128,11 @@ AACAAGACCCTTGAG TACCCGTAATAGCGT ``` -`r2_pattern` Specifies how to extract the tag barcode sequence from R2 read. Example: `L21C15` denotes that the first 21 bases are linker and tag barcode start from the 22th base and has a length of 15 bases. +`r2_pattern` Specifies how to extract the index barcode sequence from the R2 read. Example: `L21C15` means the first 21 bases are the linker, the tag barcode starts at the 22nd base and is 15 bases long. ### Running the pipeline with test data -This pipeline contains a small test data. The test config file can be found [here](../conf/test.config) can test data [here].(https://github.com/singleron-RD/sccite_test_data) +This pipeline contains a small test data. The test config file can be found [here](../conf/test.config) and test data [here](https://github.com/singleron-RD/sccite_test_data). Run the following command to test